Hi Mohammed,

sorry, you can't really skip any of it if you want those results.

cheers, Bruce

On Fri, 26 Mar 2010, Mohammed el Morabit wrote:

Dear FS experts,

I have a large data set which I want to recon-all, in order to obtain the cortical, sub-cortical parcellations and the corresponding volumes and thicknesses. As the reconstruction is very time-consuming I was wondering which steps I might skip without significant decrease in quality of the cortical segmentation. I noticed for instance that the automated topology fix takes quite long - if I skip this part, how does that change my results?

Thanks in advance.

Mohammed.