Re: [Freesurfer] Skipping time consuming FS parts.

Hi Mohammed,

sorry, you can't really skip any of it if you want those results.

cheers, Bruce

On Fri, 26 Mar 2010, Mohammed el Morabit wrote:

Dear FS experts,

I have a large data set which I want to recon-all, in order to obtain the cortical, sub-cortical parcellations and the corresponding volumes and thicknesses. As the reconstruction is very time-consuming I was wondering which steps I might skip without significant decrease in quality of the cortical segmentation. I noticed for instance that the automated topology fix takes quite long - if I skip this part, how does that change my results?

Thanks in advance.

Mohammed.