Dear professors, I have installed freesurfer according to the description online. However, when display the a result by freeview, it did not show like usual. The detailed information was followed. First, I convert SPM result into the format that freeview can read. The following was command I use: mri_vol2surf --mov ${AC}.nii.gz --mni152reg --hemi lh --o surf/lh.${AC}.z.fsaverage.nii.gz --trgsubject fsaverage --interp nearest --noreshape --cortex mri_vol2surf --mov ${AC}.nii.gz --mni152reg --hemi rh --o surf/rh.${AC}.z.fsaverage.nii.gz --trgsubject fsaverage --interp nearest --noreshape --cortex
Second, I open freeview and then load surface with the lh.white/rh.white of "$FREESURFER_HOME/ subjects/fsaverages5/surf". However, when I overlay the result, which was in the attachment, and click configure overlay. It shows like this :
I don't know what to do now. Please guide me!
Wang Kangcheng Faculty of Psychology, Southwest University, China Email: kangchengwang0808@gmail.com / wangkangcheng.001@163.com Address: No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China Welcome to our team: http://www.qiujlab.com/code/page/
why are you using fsaverage5 instead of fsaverage?
On 04/16/2014 05:24 AM, kangchengwang0808@gmail.com wrote:
Dear professors, I have installed freesurfer according to the description online. However, when display the a result by freeview, it did not show like usual. The detailed information was followed. First, I convert SPM result into the format that freeview can read. The following was command I use: mri_vol2surf --mov ${AC}.nii.gz --mni152reg --hemi lh --o surf/lh.${AC}.z.fsaverage.nii.gz --trgsubject fsaverage --interp nearest --noreshape --cortex mri_vol2surf --mov ${AC}.nii.gz --mni152reg --hemi rh --o surf/rh.${AC}.z.fsaverage.nii.gz --trgsubject fsaverage --interp nearest --noreshape --cortex
Second, I open freeview and then load surface with the lh.white/rh.white of "$FREESURFER_HOME/ subjects/fsaverages5/surf". However, when I overlay the result, which was in the attachment, and click configure overlay. It shows like this :
I don't know what to do now. Please guide me!
Wang Kangcheng
Faculty of Psychology, Southwest University, China
Email:_kangchengwang0808@gmail.com_ / _wangkangcheng.001@163.com_
Address: No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China
Welcome to our team: http://www.qiujlab.com/code/page/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
kangchengwang0808＠gmail.com