Fair enough. If recon-all is run without the subcortical segmentation, do manual edits to the wm volumes (eg., filling in ventricles, basal ganglia, etc) need to be performed?
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tue 9/13/2005 6:59 AM To: Fornito, Alexander Cc: Bosky Ravindranath; freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] subcortical segmentation Hi Alex,
that was a prerelease version. The subcortical stuff seems fine, but we have fixed a couple of small bugs in other things, so we are going to recommend that people rerun things with the new official release that we are hoping to be done with soon (note that rerunning won't involve any manual interactions).
Bruce
On Tue, 13 Sep 2005, Fornito, Alexander wrote:
I thought the recent version, eg., freesurfer-Linux-rh7.3-dev20050912-full.tar.gz did the subcortical segmentation. I've run it on a couplde of brains so far and it seems to be ok. Are there still some bugs with it?
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tue 9/13/2005 5:45 AM To: Bosky Ravindranath Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] subcortical segmentation
not quite, sorry. We *really* don't want to release a version with major problems, so we've been going through everything repeatedly trying to catch everything. We're getting there.
Bruce
On Mon, 12 Sep 2005, Bosky Ravindranath wrote:
To Bruce Fischl and List, I just wanted to know if the subcortical segmentation feature has been released. Thanks, Bosky
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
yes, but they will be kept when you rerun.
On Tue, 13 Sep 2005, Fornito, Alexander wrote:
Fair enough. If recon-all is run without the subcortical segmentation, do manual edits to the wm volumes (eg., filling in ventricles, basal ganglia, etc) need to be performed?
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tue 9/13/2005 6:59 AM To: Fornito, Alexander Cc: Bosky Ravindranath; freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] subcortical segmentation Hi Alex,
that was a prerelease version. The subcortical stuff seems fine, but we have fixed a couple of small bugs in other things, so we are going to recommend that people rerun things with the new official release that we are hoping to be done with soon (note that rerunning won't involve any manual interactions).
Bruce
On Tue, 13 Sep 2005, Fornito, Alexander wrote:
I thought the recent version, eg., freesurfer-Linux-rh7.3-dev20050912-full.tar.gz did the subcortical segmentation. I've run it on a couplde of brains so far and it seems to be ok. Are there still some bugs with it?
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Tue 9/13/2005 5:45 AM To: Bosky Ravindranath Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] subcortical segmentation
not quite, sorry. We *really* don't want to release a version with major problems, so we've been going through everything repeatedly trying to catch everything. We're getting there.
Bruce
On Mon, 12 Sep 2005, Bosky Ravindranath wrote:
To Bruce Fischl and List, I just wanted to know if the subcortical segmentation feature has been released. Thanks, Bosky
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Fornito, Alexander