yes, but recon-all will run it for you and store the results in text files in each subject's stats dir On Fri, 14 Feb 2014, Saurabh Thakur wrote:

Hi Bruce,

That means i should use mri_segstats for the same....?

Thanks,

cheers Saurabh Thakur,

On Wed, Feb 12, 2014 at 6:52 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Saurabh

  we don't measure sulcal CSF as it's really not visible on only a
  T1. The other measures should all be in the files in the stats
  directory - no need to measure it yourself.

  cheers
  Bruce

  On Wed, 12 Feb 2014, Saurabh Thakur wrote:

        Hello Free surfer Expert ,
         
        I am kooking for the exact value of voxel / pixel
        which represent White
        ,Grey and CSF fluid matter in brain.

        I am trying to draw contour, and to measure the
        count...or How to count the
        pixel for particular region...?

        Thanks in advance for your timely advise.

        cheers
        Saurabh Thakur,

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.