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Oops, looks like the files didn't attach. Here are links to the logs:
https://obd-public.s3.eu-west-2.amazonaws.com/recon-all-standard_out_log.log
https://obd-public.s3.eu-west-2.amazonaws.com/recon-all-status.log
https://obd-public.s3.eu-west-2.amazonaws.com/recon-all.log
Hi all.
I have a T1 scan which I run through recon-all with:
recon-all -all -parallel -subjid freesurfer
(after mksubjdirs etc)
On my office machine, recon-all completes successfully.
On a cloud machine (16GB of ram), it fails after about 4 hours.
I have attached the logs - the only immediate error I can see is "Cannot find rh.white.H".
Any advice would be much appreciated, thank you.
Ian
freesurfer@nmr.mgh.harvard.edu