Renat,

You should try running the centos4 build of freesurfer on Fedora Core 3.

The wiki site incorrectly stated to use the rh9 build with fc3, but after speaking with our sysadmin, apparently Fedora Core 3 (fc3) is closer in likeness to Centos4, so you may want to give the centos4 build a try.

Nick

On Fri, 2006-02-03 at 09:30 -1000, Renat Yakupov wrote:

Hi everybody,

I am running freesurfer-Linux-rh9-dev20051003 version of FreeSurfer on Fedora Core 3. I installed it without a problem and I can successfully run autorecon1 step, However, when I attempt autorecon2 step, it exits with an error after about 8 hours of processing. Please see attached a text file of complete autorecon2 step output and please see below the last lines about the error:

Editing WM with SubCort Seg Fri Feb 3 08:30:54 HST 2006

mri_edit_wm_with_aseg wm.mgz aseg.mgz wm.mgz

Segmentation fault (core dumped)

ERROR: mri_edit_wm_with_aseg with non-zero status

Linux extra 2.6.9-1.667 #1 Tue Nov 2 14:41:25 EST 2004 i686 i686 i386 GNU/Linux

recon-all exited with errors at Fri Feb 3 08:31:08 HST 2006

I ran it on two different subjects’ data with the same outcome. The weird thing is that these two subjects’ dataset were processed on another computer with the same version of FreeSurfer and Fedora Core, and there were no problems.

The computer I am having problems on is a Dell OptiPlex GX620.

Has anybody encountered anything like that? Any ideas what might cause it?

Thank you.

Regards,

Renat.

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