Hi, there,
I have used FreeSurfer to measure the hippocampal size of 200 ADNI subjects, and now I'd like to QC the hippocampal measurement. Anyone can give me some suggestion to do this, instead of loading they one-by-one ?
Thanks! Guang _________________________________________________________________ Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. http://clk.atdmt.com/GBL/go/201469229/direct/01/
a simple way is to just plot the values. if a segmentation is horribly wrong, then its value will be way out of bounds compared to the others. note that there will be quite a bit of variation in size because of the AD subjects, so this method is just a simple QC.
n.
On Thu, 2010-02-04 at 12:58 -0600, Guang Zeng wrote:
Hi, there,
I have used FreeSurfer to measure the hippocampal size of 200 ADNI subjects, and now I'd like to QC the hippocampal measurement. Anyone can give me some suggestion to do this, instead of loading they one-by-one ?
Thanks! Guang
Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. Sign up now. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Guang,
there are some tools in slicer for making flythrough movies you could use to make a quick check.
cheers, Bruce
On Thu, 4 Feb 2010, Guang Zeng wrote:
Hi, there,
I have used FreeSurfer to measure the hippocampal size of 200 ADNI subjects, and now I'd like to QC the hippocampal measurement. Anyone can give me some suggestion to do this, instead of loading they one-by-one ?
Thanks! Guang
Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. http://clk.atdmt.com/GBL/go/201469229/direct/01/
Hello, Bruce,
Thanks a lot! Currently, I am using Slicer 2.6. Is the QA tool in VTKFreeSurfer Module the tool you mean to make flythrough movies?
Thanks! Guang
Date: Thu, 4 Feb 2010 14:20:42 -0500 From: fischl@nmr.mgh.harvard.edu To: freesurfer_zg@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] how to QC hippocampal measurement
Hi Guang,
there are some tools in slicer for making flythrough movies you could use to make a quick check.
cheers, Bruce
On Thu, 4 Feb 2010, Guang Zeng wrote:
Hi, there,
I have used FreeSurfer to measure the hippocampal size of 200 ADNI subjects, and now I'd like to QC the hippocampal measurement. Anyone can give me some suggestion to do this, instead of loading they one-by-one ?
Thanks! Guang
Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. http://clk.atdmt.com/GBL/go/201469229/direct/01/
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I don't know - you should ask the slicer folks. Bruce On Thu, 20 May 2010, Guang Zeng wrote:
Hello, Bruce,
Thanks a lot! Currently, I am using Slicer 2.6. Is the QA tool in VTKFreeSurfer Module the tool you mean to make flythrough movies?
Thanks! Guang
Date: Thu, 4 Feb 2010 14:20:42 -0500 From: fischl@nmr.mgh.harvard.edu To: freesurfer_zg@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] how to QC hippocampal measurement
Hi Guang,
there are some tools in slicer for making flythrough movies you could use to make a quick check.
cheers, Bruce
On Thu, 4 Feb 2010, Guang Zeng wrote:
Hi, there,
I have used FreeSurfer to measure the hippocampal size of 200 ADNI subjects, and now I'd like to QC the hippocampal measurement. Anyone can give me some suggestion to do this, instead of loading they one-by-one ?
Thanks! Guang
Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. http://clk.atdmt.com/GBL/go/201469229/direct/01/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=P...
freesurfer@nmr.mgh.harvard.edu
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Guang Zeng -
Nick Schmansky