Hi Feng-Xian,

mri_convert only works on volumes, and to convert e.g. the orig.mgz volume to nifti use:

mri_convert orig.mgz orig.nii

cheers, Bruce

On Mon, 19 Jan 2009, Feng-Xian wrote:

Hi, I am finished to run my subjects using recon-all and I would like to know the usage of mri_convert to convert the results of FreeSurfer into the analyze format or nifti.

Some of the results of FreeSurfer are volumes (e.g. brainmask.mgz) and some of them are surfaces (e.g. lh inflated).

What can I do to convert these formats to analysis format or nifti?

Thanks in advance! Feng-Xian

---

Chang Gung University Mail Server Web Mail system By Chang-Gung University Information Center (http://www.cgu.edu.tw/ic/)

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer