not sure, but this is probably part of your problem (Doug?):

gate [bold] tail -20 001/inorm.log

In

/space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m at line 183 Warning: Divide by zero.

In

/space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m at line 184 Warning: Divide by zero.

In

/space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m at line 185 Warning: Divide by zero.

In

/space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m at line 192 ??? Error using ==> betainc X must be in the interval [0,1].

Error in ==> /space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/tTest.m On line 37 ==> p = betainc(z,dof/2,0.5);

Error in ==> /space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m On line 223 ==> tSigCor = tTest(s.ntp-2,tCor);

...

Fri Jul 2 13:46:44 EDT 2004 inorm: finished

On Fri, 30 Jul 2004, Tamara Knutsen wrote:

so in /space/meso/26/users/040630Edgar i ran: tkregister-sess -sf sf -df df -nosurf -rsd bold -fsd bold -surf white

first setting my SUBJECTS_DIR to /space/orsay/2/knutsen and subjectname file to edgar

and this is what i get in the horizontal view.

the functional data is completely unreadable, yet, when viewed in sliceview-sess or xds, it looks fine.

so in addition to massive orientation and scaling problems upon trying to begin registration, now i have some weird saturation of my functional volume.

do any of you have any ideas on how i might fix this? or can you point me in the direction of whomever may?

thanks, tamara