not sure, but this is probably part of your problem (Doug?):
gate [bold] tail -20 001/inorm.log
In
/space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m at line 183 Warning: Divide by zero.
In
/space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m at line 184 Warning: Divide by zero.
In
/space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m at line 185 Warning: Divide by zero.
In
/space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m at line 192 ??? Error using ==> betainc X must be in the interval [0,1].
Error in ==> /space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/tTest.m On line 37 ==> p = betainc(z,dof/2,0.5);
Error in ==> /space/lyon/1/home/inverse/freesurfer_alpha/fsfast/toolbox/fast_inorm.m On line 223 ==> tSigCor = tTest(s.ntp-2,tCor);
Fri Jul 2 13:46:44 EDT 2004 inorm: finished
On Fri, 30 Jul 2004, Tamara Knutsen wrote:
so in /space/meso/26/users/040630Edgar i ran: tkregister-sess -sf sf -df df -nosurf -rsd bold -fsd bold -surf white
first setting my SUBJECTS_DIR to /space/orsay/2/knutsen and subjectname file to edgar
and this is what i get in the horizontal view.
the functional data is completely unreadable, yet, when viewed in sliceview-sess or xds, it looks fine.
so in addition to massive orientation and scaling problems upon trying to begin registration, now i have some weird saturation of my functional volume.
do any of you have any ideas on how i might fix this? or can you point me in the direction of whomever may?
thanks, tamara