External Email - Use Caution
I have made a new install of everything, now running Ubuntu 20.04 with Virtualbox 6.0 and Freesurfer 7.1. Freesurfer crashes with : "nquads=10158084, nvertices=529 terminate called after throwing an instance of 'int' Aborted (core dumped)" If I try to open surface lh.area or lh.thickness. Others like lh.pial and lh.inflated works nicely.
I have tried this with one of "my" patients and bert with same result. Suggestions?
Pål
Pål G. Larsson M.D., PhD. not sensitive
Hi Pål,
lh.area and lh.thickness are not surface files. They can be loaded as a surface overlay like this:
freeview -f lh.pial:overlay=lh.thickness
Best, Ruopeng
On Apr 26, 2021, at 9:36 AM, Pål Gunnar Larsson <pall@ous-hf.nomailto:pall@ous-hf.no> wrote:
External Email - Use Caution
I have made a new install of everything, now running Ubuntu 20.04 with Virtualbox 6.0 and Freesurfer 7.1. Freesurfer crashes with : “nquads=10158084, nvertices=529 terminate called after throwing an instance of 'int' Aborted (core dumped)” If I try to open surface lh.area or lh.thickness. Others like lh.pial and lh.inflated works nicely.
I have tried this with one of “my” patients and bert with same result. Suggestions?
Pål
Pål G. Larsson M.D., PhD. not sensitive
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Thank you. In version 5 I could load an overlay with e.g. thickness. I don’t see that alternative in Freeview?
Pål not sensitive
Fra: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] På vegne av Wang, Ruopeng Sendt: 26. april 2021 15:42 Til: Freesurfer support list Emne: Re: [Freesurfer] Freeview issues with surfaces
Hi Pål,
lh.area and lh.thickness are not surface files. They can be loaded as a surface overlay like this:
freeview -f lh.pial:overlay=lh.thickness
Best, Ruopeng
On Apr 26, 2021, at 9:36 AM, Pål Gunnar Larsson <pall@ous-hf.nomailto:pall@ous-hf.no> wrote:
External Email - Use Caution
I have made a new install of everything, now running Ubuntu 20.04 with Virtualbox 6.0 and Freesurfer 7.1. Freesurfer crashes with : “nquads=10158084, nvertices=529 terminate called after throwing an instance of 'int' Aborted (core dumped)” If I try to open surface lh.area or lh.thickness. Others like lh.pial and lh.inflated works nicely.
I have tried this with one of “my” patients and bert with same result. Suggestions?
Pål
Pål G. Larsson M.D., PhD. not sensitive
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1jxM4XNRCDEY7pdeyMDxSEGnm_a53bxf9Z1OC9vLW-xj-DJ...
There is a ‘Overlay’ drop down box on the left pane, where you can load overlay after loading a surface.
Ruopeng
On Apr 26, 2021, at 9:49 AM, Pål Gunnar Larsson <pall@ous-hf.nomailto:pall@ous-hf.no> wrote:
External Email - Use Caution
Thank you. In version 5 I could load an overlay with e.g. thickness. I don’t see that alternative in Freeview?
Pål not sensitive
Fra: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] På vegne av Wang, Ruopeng Sendt: 26. april 2021 15:42 Til: Freesurfer support list Emne: Re: [Freesurfer] Freeview issues with surfaces
Hi Pål,
lh.area and lh.thickness are not surface files. They can be loaded as a surface overlay like this:
freeview -f lh.pial:overlay=lh.thickness
Best, Ruopeng
On Apr 26, 2021, at 9:36 AM, Pål Gunnar Larsson <pall@ous-hf.nomailto:pall@ous-hf.no> wrote:
External Email - Use Caution
I have made a new install of everything, now running Ubuntu 20.04 with Virtualbox 6.0 and Freesurfer 7.1. Freesurfer crashes with : “nquads=10158084, nvertices=529 terminate called after throwing an instance of 'int' Aborted (core dumped)” If I try to open surface lh.area or lh.thickness. Others like lh.pial and lh.inflated works nicely.
I have tried this with one of “my” patients and bert with same result. Suggestions?
Pål
Pål G. Larsson M.D., PhD. not sensitive
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1jxM4XNRCDEY7pdeyMDxSEGnm_a53bxf9Z1OC9vLW-xj-DJeF1zUw8kn1lZkTX7ABIS8GBeF31KuMxO36rHaRrcsyo-LyycCP-YYdRv9y4OkTpbQqk3NMFPX4RCd_iNQ_rdQAW4lZg0xaUykRruG0_lMv4LZzRbpLyz8h5aziSIfPEF4uerlhdqoaNJTYDGoOTXVWEJ22r_bCKaZZ8gAKZ91YSqk_67aOFj0zs-KraAHVG4U2tcSjGASziPydDmX6tNcFegNVC28bg5ERaLjRUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
☺ Up and running. Thank you!
Best Pål
Denne meldingen innholder ikke sensitiv informasjon som bryter med Ous sine regler for taushetsplikt
Fra: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] På vegne av Wang, Ruopeng Sendt: 26. april 2021 16:05 Til: Freesurfer support list Emne: Re: [Freesurfer] Freeview issues with surfaces
There is a ‘Overlay’ drop down box on the left pane, where you can load overlay after loading a surface.
Ruopeng
On Apr 26, 2021, at 9:49 AM, Pål Gunnar Larsson <pall@ous-hf.nomailto:pall@ous-hf.no> wrote:
External Email - Use Caution
Thank you. In version 5 I could load an overlay with e.g. thickness. I don’t see that alternative in Freeview?
Pål not sensitive
Fra: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] På vegne av Wang, Ruopeng Sendt: 26. april 2021 15:42 Til: Freesurfer support list Emne: Re: [Freesurfer] Freeview issues with surfaces
Hi Pål,
lh.area and lh.thickness are not surface files. They can be loaded as a surface overlay like this:
freeview -f lh.pial:overlay=lh.thickness
Best, Ruopeng
On Apr 26, 2021, at 9:36 AM, Pål Gunnar Larsson <pall@ous-hf.nomailto:pall@ous-hf.no> wrote:
External Email - Use Caution
I have made a new install of everything, now running Ubuntu 20.04 with Virtualbox 6.0 and Freesurfer 7.1. Freesurfer crashes with : “nquads=10158084, nvertices=529 terminate called after throwing an instance of 'int' Aborted (core dumped)” If I try to open surface lh.area or lh.thickness. Others like lh.pial and lh.inflated works nicely.
I have tried this with one of “my” patients and bert with same result. Suggestions?
Pål
Pål G. Larsson M.D., PhD. not sensitive
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1-ZV5UfYv1_Dd_l-827gayVRHvVVlubT8_JQJKjOwRweAGw...https://secure-web.cisco.com/1jxM4XNRCDEY7pdeyMDxSEGnm_a53bxf9Z1OC9vLW-xj-DJeF1zUw8kn1lZkTX7ABIS8GBeF31KuMxO36rHaRrcsyo-LyycCP-YYdRv9y4OkTpbQqk3NMFPX4RCd_iNQ_rdQAW4lZg0xaUykRruG0_lMv4LZzRbpLyz8h5aziSIfPEF4uerlhdqoaNJTYDGoOTXVWEJ22r_bCKaZZ8gAKZ91YSqk_67aOFj0zs-KraAHVG4U2tcSjGASziPydDmX6tNcFegNVC28bg5ERaLjRUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1-ZV5UfYv1_Dd_l-827gayVRHvVVlubT8_JQJKjOwRweAGw...
Hi Pål
Thickness and curvature are overlays, not surfaces. Load a surface then load them as either overlays or curvature files.
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Pål Gunnar Larsson Sent: Monday, April 26, 2021 9:50 AM To: 'Freesurfer support list' freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Freeview issues with surfaces
External Email - Use Caution Thank you. In version 5 I could load an overlay with e.g. thickness. I don’t see that alternative in Freeview?
Pål not sensitive
Fra: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] På vegne av Wang, Ruopeng Sendt: 26. april 2021 15:42 Til: Freesurfer support list Emne: Re: [Freesurfer] Freeview issues with surfaces
Hi Pål,
lh.area and lh.thickness are not surface files. They can be loaded as a surface overlay like this:
freeview -f lh.pial:overlay=lh.thickness
Best, Ruopeng
On Apr 26, 2021, at 9:36 AM, Pål Gunnar Larsson <pall@ous-hf.nomailto:pall@ous-hf.no> wrote:
External Email - Use Caution
I have made a new install of everything, now running Ubuntu 20.04 with Virtualbox 6.0 and Freesurfer 7.1. Freesurfer crashes with : “nquads=10158084, nvertices=529 terminate called after throwing an instance of 'int' Aborted (core dumped)” If I try to open surface lh.area or lh.thickness. Others like lh.pial and lh.inflated works nicely.
I have tried this with one of “my” patients and bert with same result. Suggestions?
Pål
Pål G. Larsson M.D., PhD. not sensitive
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1jxM4XNRCDEY7pdeyMDxSEGnm_a53bxf9Z1OC9vLW-xj-DJeF1zUw8kn1lZkTX7ABIS8GBeF31KuMxO36rHaRrcsyo-LyycCP-YYdRv9y4OkTpbQqk3NMFPX4RCd_iNQ_rdQAW4lZg0xaUykRruG0_lMv4LZzRbpLyz8h5aziSIfPEF4uerlhdqoaNJTYDGoOTXVWEJ22r_bCKaZZ8gAKZ91YSqk_67aOFj0zs-KraAHVG4U2tcSjGASziPydDmX6tNcFegNVC28bg5ERaLjRUg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
freesurfer@nmr.mgh.harvard.edu
-
Fischl, Bruce -
Pål Gunnar Larsson -
Wang, Ruopeng