External Email - Use Caution
By crashing from the GUI do you mean that you when you try to navigate to open a file, e.g., $SUBJECTS_DIR/bert/mri/brain.mgz, using the freeview GUI Open-> pull down menu that you get the core dump listed below, but it works when your run “freeview $SUBJECTS_DIR/bert/mri/brain.mgz” from the command line in the terminal window?
The core dump shows a memory allocation error on MacOSX. Some postings indicate setting MallocNanoZone to zero before running your program/command can remedy this, $ bash$ export MallocNanoZone=0 && freeview - but this may not work. I don’t see any other workarounds for this right now. I have not seen this error before with freeview on older versions of MacOS, so it may be related to running on MacOS 10.13.
- R.
On Dec 19, 2022, at 14:03, Addison, Reuben <RAddison@mghihp.edu> wrote:I updated the Xquartz yet still same issue. Freeview only works with the command line but the gui is till crashing. Gkxgears seems to work fine I have attached images of both the crash report and the graphics information about my mac. Reuben A
The answer to this is question ‘ opening an image from the gui ‘ is yes. The image only opens when I open from the command line
Reuben A.
Get Outlook for iOShttps://aka.ms/o0ukef ________________________________ From: fsbuild fsbuild@contbay.com Sent: Tuesday, December 20, 2022 7:56:12 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Cc: Addison, Reuben RAddison@MGHIHP.EDU Subject: Re: [Freesurfer] Freeview quit unexpectedly
External Email - Use Caution
By crashing from the GUI do you mean that you when you try to navigate to open a file, e.g., $SUBJECTS_DIR/bert/mri/brain.mgz, using the freeview GUI Open-> pull down menu that you get the core dump listed below, but it works when your run “freeview $SUBJECTS_DIR/bert/mri/brain.mgz” from the command line in the terminal window?
The core dump shows a memory allocation error on MacOSX. Some postings indicate setting MallocNanoZone to zero before running your program/command can remedy this,
$ bash $ export MallocNanoZone=0 && freeview
- but this may not work. I don’t see any other workarounds for this right now. I have not seen this error before with freeview on older versions of MacOS, so it may be related to running on MacOS 10.13.
- R.
On Dec 19, 2022, at 14:03, Addison, Reuben RAddison@mghihp.edu wrote:
I updated the Xquartz yet still same issue. Freeview only works with the command line but the gui is till crashing.
Gkxgears seems to work fine
I have attached images of both the crash report and the graphics information about my mac.
Reuben A
After you load the image from the command-line, can you then load more images from the GUI?
Ruopeng
On Dec 20, 2022, at 3:23 AM, Addison, Reuben <RAddison@mghihp.edumailto:RAddison@mghihp.edu> wrote:
The answer to this is question ‘ opening an image from the gui ‘ is yes. The image only opens when I open from the command line
Reuben A.
Get Outlook for iOShttps://aka.ms/o0ukef ________________________________ From: fsbuild <fsbuild@contbay.commailto:fsbuild@contbay.com> Sent: Tuesday, December 20, 2022 7:56:12 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Cc: Addison, Reuben <RAddison@MGHIHP.EDUmailto:RAddison@MGHIHP.EDU> Subject: Re: [Freesurfer] Freeview quit unexpectedly
External Email - Use Caution
By crashing from the GUI do you mean that you when you try to navigate to open a file, e.g., $SUBJECTS_DIR/bert/mri/brain.mgz, using the freeview GUI Open-> pull down menu that you get the core dump listed below, but it works when your run “freeview $SUBJECTS_DIR/bert/mri/brain.mgz” from the command line in the terminal window?
The core dump shows a memory allocation error on MacOSX. Some postings indicate setting MallocNanoZone to zero before running your program/command can remedy this,
$ bash $ export MallocNanoZone=0 && freeview
- but this may not work. I don’t see any other workarounds for this right now. I have not seen this error before with freeview on older versions of MacOS, so it may be related to running on MacOS 10.13.
- R.
On Dec 19, 2022, at 14:03, Addison, Reuben <RAddison@mghihp.edumailto:RAddison@mghihp.edu> wrote:
I updated the Xquartz yet still same issue. Freeview only works with the command line but the gui is till crashing.
Gkxgears seems to work fine
I have attached images of both the crash report and the graphics information about my mac.
Reuben A
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