thanks doug,

that's what i ended up doing. once i'm done, i might run it by you'll to make sure i'm not misinterpreting any of the files.

cheers,

satra

On Mon, Jan 7, 2013 at 12:51 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:

Hi Satra, I don't think we've ever compiled such a thing. Maybe just run recon-all and then ls -lR :) doug

On 01/05/2013 02:48 PM, Satrajit Ghosh wrote:

...

hi folks,

happy new year.

we are trying to create an object model for the freesurfer directory.

is there a function/script in freesurfer that would return me effectively something `ls -lR` but only the items that are mandatory for a subjects' directory?

if not, is there a document that lists the relevant outputs along the lines of something like this:

http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FEAT/UserGuide#FEAT_Output

and if anybody is interested, here is our work in progress in cataloging freesurfer directory structure and stats (coming soon) in the w3c-prov model format.

http://nbviewer.ipython.org/urls/dl.dropbox.com/s/1ssv4i1dyraa46h/freesurfer...

...

(the link doesn't have versioning yet - but will keep changing as we work on it)

cheers,

satra

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.