thanks doug,
that's what i ended up doing. once i'm done, i might run it by you'll to make sure i'm not misinterpreting any of the files.
cheers,
satra
On Mon, Jan 7, 2013 at 12:51 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
Hi Satra, I don't think we've ever compiled such a thing. Maybe just run recon-all and then ls -lR :) doug
On 01/05/2013 02:48 PM, Satrajit Ghosh wrote:
hi folks,
happy new year.
we are trying to create an object model for the freesurfer directory.
is there a function/script in freesurfer that would return me effectively something `ls -lR` but only the items that are mandatory for a subjects' directory?
if not, is there a document that lists the relevant outputs along the lines of something like this:
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FEAT/UserGuide#FEAT_Output
and if anybody is interested, here is our work in progress in cataloging freesurfer directory structure and stats (coming soon) in the w3c-prov model format.
http://nbviewer.ipython.org/urls/dl.dropbox.com/s/1ssv4i1dyraa46h/freesurfer...
(the link doesn't have versioning yet - but will keep changing as we work on it)
cheers,
satra
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