Hi Freesurfers,
I get an error when using spmregister saying "Maximum variable size allowed by the program is exceeded"- is that a problem with the number of dicoms? I can attach a screenshot of the error if that helps.
Thanks, Mia
never seen that. can you send your command line and the log file? On 02/28/2014 11:43 AM, Borzello, Mia wrote:
Hi Freesurfers,
I get an error when using spmregister saying "Maximum variable size allowed by the program is exceeded"- is that a problem with the number of dicoms? I can attach a screenshot of the error if that helps.
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
the last line of "error_spm" is the command line, and the errors for that command are above.
Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Friday, February 28, 2014 11:58 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error at spmregister
never seen that. can you send your command line and the log file? On 02/28/2014 11:43 AM, Borzello, Mia wrote:
Hi Freesurfers,
I get an error when using spmregister saying "Maximum variable size allowed by the program is exceeded"- is that a problem with the number of dicoms? I can attach a screenshot of the error if that helps.
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
looks like there is something going wrong in your matlab setup
Warning: Executing startup failed in matlabrc. This indicates a potentially serious problem in your MATLAB setup, which should be resolved as soon as possible. Error detected was: MATLAB:UndefinedFunction Undefined function or variable 'mne_setup_toolbox'.
On 02/28/2014 12:01 PM, Borzello, Mia wrote:
the last line of "error_spm" is the command line, and the errors for that command are above.
Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Friday, February 28, 2014 11:58 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error at spmregister
never seen that. can you send your command line and the log file? On 02/28/2014 11:43 AM, Borzello, Mia wrote:
Hi Freesurfers,
I get an error when using spmregister saying "Maximum variable size allowed by the program is exceeded"- is that a problem with the number of dicoms? I can attach a screenshot of the error if that helps.
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I haven't actually changed anything in the setup though- how do I figure out what to change?
Thanks, Mia
Sent from my iPhone
On Feb 28, 2014, at 7:31 PM, "Douglas N Greve" greve@nmr.mgh.harvard.edu wrote:
looks like there is something going wrong in your matlab setup
Warning: Executing startup failed in matlabrc. This indicates a potentially serious problem in your MATLAB setup, which should be resolved as soon as possible. Error detected was: MATLAB:UndefinedFunction Undefined function or variable 'mne_setup_toolbox'.
On 02/28/2014 12:01 PM, Borzello, Mia wrote: the last line of "error_spm" is the command line, and the errors for that command are above.
Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Friday, February 28, 2014 11:58 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error at spmregister
never seen that. can you send your command line and the log file?
On 02/28/2014 11:43 AM, Borzello, Mia wrote: Hi Freesurfers,
I get an error when using spmregister saying "Maximum variable size allowed by the program is exceeded"- is that a problem with the number of dicoms? I can attach a screenshot of the error if that helps.
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
this is a matlab problem, not a FreeSurfer problem, so I'm not sure. It might be the MNE toolbox. I would try commenting out all the non-FS stuff in your ~/matlab/startup.m file and see if the problem goes away.
On 3/1/14 8:50 AM, Borzello, Mia wrote:
I haven't actually changed anything in the setup though- how do I figure out what to change?
Thanks, Mia
Sent from my iPhone
On Feb 28, 2014, at 7:31 PM, "Douglas N Greve" greve@nmr.mgh.harvard.edu wrote:
looks like there is something going wrong in your matlab setup
Warning: Executing startup failed in matlabrc. This indicates a potentially serious problem in your MATLAB setup, which should be resolved as soon as possible. Error detected was: MATLAB:UndefinedFunction Undefined function or variable 'mne_setup_toolbox'.
On 02/28/2014 12:01 PM, Borzello, Mia wrote: the last line of "error_spm" is the command line, and the errors for that command are above.
Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Friday, February 28, 2014 11:58 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error at spmregister
never seen that. can you send your command line and the log file?
On 02/28/2014 11:43 AM, Borzello, Mia wrote: Hi Freesurfers,
I get an error when using spmregister saying "Maximum variable size allowed by the program is exceeded"- is that a problem with the number of dicoms? I can attach a screenshot of the error if that helps.
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
So I'm running spmregister from a new computer now, and I'm still not getting a successful output. I am not longer getting a matlab error, but after I run spmregister, I then run tkregister2 but get an error that it couldn't open spm.reg.dat. It wasn't created in the spmregister I guess. What would be the problem when I ran spmregister
Thanks, m ________________________________________ From: Douglas Greve [greve@nmr.mgh.harvard.edu] Sent: Saturday, March 01, 2014 10:31 AM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error at spmregister
this is a matlab problem, not a FreeSurfer problem, so I'm not sure. It might be the MNE toolbox. I would try commenting out all the non-FS stuff in your ~/matlab/startup.m file and see if the problem goes away.
On 3/1/14 8:50 AM, Borzello, Mia wrote:
I haven't actually changed anything in the setup though- how do I figure out what to change?
Thanks, Mia
Sent from my iPhone
On Feb 28, 2014, at 7:31 PM, "Douglas N Greve" greve@nmr.mgh.harvard.edu wrote:
looks like there is something going wrong in your matlab setup
Warning: Executing startup failed in matlabrc. This indicates a potentially serious problem in your MATLAB setup, which should be resolved as soon as possible. Error detected was: MATLAB:UndefinedFunction Undefined function or variable 'mne_setup_toolbox'.
On 02/28/2014 12:01 PM, Borzello, Mia wrote: the last line of "error_spm" is the command line, and the errors for that command are above.
Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Friday, February 28, 2014 11:58 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error at spmregister
never seen that. can you send your command line and the log file?
On 02/28/2014 11:43 AM, Borzello, Mia wrote: Hi Freesurfers,
I get an error when using spmregister saying "Maximum variable size allowed by the program is exceeded"- is that a problem with the number of dicoms? I can attach a screenshot of the error if that helps.
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Mia, these types of general descriptions are hard to debug. Please remember to send your command line and terminal output and/or log file. doug
On 03/03/2014 03:42 PM, Borzello, Mia wrote:
So I'm running spmregister from a new computer now, and I'm still not getting a successful output. I am not longer getting a matlab error, but after I run spmregister, I then run tkregister2 but get an error that it couldn't open spm.reg.dat. It wasn't created in the spmregister I guess. What would be the problem when I ran spmregister
Thanks, m ________________________________________ From: Douglas Greve [greve@nmr.mgh.harvard.edu] Sent: Saturday, March 01, 2014 10:31 AM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error at spmregister
this is a matlab problem, not a FreeSurfer problem, so I'm not sure. It might be the MNE toolbox. I would try commenting out all the non-FS stuff in your ~/matlab/startup.m file and see if the problem goes away.
On 3/1/14 8:50 AM, Borzello, Mia wrote:
I haven't actually changed anything in the setup though- how do I figure out what to change?
Thanks, Mia
Sent from my iPhone
On Feb 28, 2014, at 7:31 PM, "Douglas N Greve" greve@nmr.mgh.harvard.edu wrote:
looks like there is something going wrong in your matlab setup
Warning: Executing startup failed in matlabrc. This indicates a potentially serious problem in your MATLAB setup, which should be resolved as soon as possible. Error detected was: MATLAB:UndefinedFunction Undefined function or variable 'mne_setup_toolbox'.
On 02/28/2014 12:01 PM, Borzello, Mia wrote: the last line of "error_spm" is the command line, and the errors for that command are above.
Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Friday, February 28, 2014 11:58 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error at spmregister
never seen that. can you send your command line and the log file?
On 02/28/2014 11:43 AM, Borzello, Mia wrote: Hi Freesurfers,
I get an error when using spmregister saying "Maximum variable size allowed by the program is exceeded"- is that a problem with the number of dicoms? I can attach a screenshot of the error if that helps.
Thanks, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Borzello, Mia -
Douglas Greve -
Douglas N Greve