Hi all, While using asegstats2table, I got following error for few subjects, WARN SUBID: nmeasure 66, expecting 55 It let me extract cortical thickness and surface area using aparcstats2table though. Any suggestions?
-SABIN
That means that it was expecting to find 66 segmentations but only found 55. Sometimes there are some segmentations in one subject that are not in another (usually hypointensities). But 11 is too many. Have you looked at the aseg to see if it looks right? You can also compare the aseg.stats file to see which segs are missing. doug
On 3/2/14 9:46 AM, sabin khadka wrote:
Hi all, While using asegstats2table, I got following error for few subjects, WARN SUBID: nmeasure 66, expecting 55 It let me extract cortical thickness and surface area using aparcstats2table though. Any suggestions?
-SABIN
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
All aseg.stats seems to have volume of 45 ROIs with some hypointensities value =0. Also, I checked aseg.mgz and looks fine with these subjects. I extracted values with asegstats2table with --all-seg flag. I hope that is okay?
On Sunday, March 2, 2014 11:28 AM, Douglas Greve greve@nmr.mgh.harvard.edu wrote:
That means that it was expecting to find 66 segmentations but only found 55. Sometimes there are some segmentations in one subject that are not in another (usually hypointensities). But 11 is too many. Have you looked at the aseg to see if it looks right? You can also compare the aseg.stats file to see which segs are missing. doug
On 3/2/14 9:46 AM, sabin khadka wrote:
Hi all,
While using asegstats2table, I got following error for few subjects, WARN SUBID: nmeasure 66, expecting 55 It let me extract cortical thickness and surface area using aparcstats2table though. Any suggestions?
-SABIN
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
actually, you are right, they should have 45. Which one had 66? What was your command line? On 03/03/2014 04:22 PM, sabin khadka wrote:
All aseg.stats seems to have volume of 45 ROIs with some hypointensities value =0. Also, I checked aseg.mgz and looks fine with these subjects. I extracted values with asegstats2table with --all-seg flag. I hope that is okay?
On Sunday, March 2, 2014 11:28 AM, Douglas Greve greve@nmr.mgh.harvard.edu wrote:
That means that it was expecting to find 66 segmentations but only found 55. Sometimes there are some segmentations in one subject that are not in another (usually hypointensities). But 11 is too many. Have you looked at the aseg to see if it looks right? You can also compare the aseg.stats file to see which segs are missing. doug
On 3/2/14 9:46 AM, sabin khadka wrote:
Hi all, While using asegstats2table, I got following error for few subjects, WARN SUBID: nmeasure 66, expecting 55 It let me extract cortical thickness and surface area using aparcstats2table though. Any suggestions?
-SABIN
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Douglas Greve -
Douglas N Greve
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sabin khadka