Dear Bruce Many thanks We are doing the aseg edits in Freeview. Is that an issue? I will use the command line you sent Many thanks Lucette
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of freesurfer-request@nmr.mgh.harvard.edu freesurfer-request@nmr.mgh.harvard.edu Sent: Friday, January 6, 2017 4:00:04 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Freesurfer Digest, Vol 155, Issue 8
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Today's Topics:
1. V6 beta freeview - stopped loading remaining files when one is missing (Antonin Skoch) 2. freeview V6beta - reposition surface option (Antonin Skoch) 3. Re: mri_convert error message (Bruce Fischl) 4. Re: V6 beta freeview - stopped loading remaining files when one is missing (Ruopeng Wang) 5. Re: 6.0.0 release (Tobias Granberg) 6. Problem with freeview (Jennifer Szeto) 7. Re: minor edits to aseg lead to exist with errors in about 25% of my scans (Lucette Cysique) 8. Re: minor edits to aseg lead to exist with errors in about 25% of my scans (Bruce Fischl) 9. Re: Problem with freeview (Ruopeng Wang) 10. Re: Problem with freeview (Jennifer Szeto) 11. Postdoctoral Fellow in Machine Learning in Neuroimaging (Thomas Yeo) 12. Postdoctoral fellow in mental disorder subtypes (Thomas Yeo) 13. Fwd: REMINDER: OHBM 2017 Call For Council Nominations (Douglas N Greve)
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Message: 1 Date: Wed, 4 Jan 2017 21:38:53 +0100 From: Antonin Skoch ansk@ikem.cz Subject: [Freesurfer] V6 beta freeview - stopped loading remaining files when one is missing To: freesurfer@nmr.mgh.harvard.edu Message-ID: 1798454155-32478@posta.medicon.cz Content-Type: text/plain; charset="utf-8"
Dear experts,
with V6 beta version of freeview I encountered, that when some input file specified in command line is missing, the loading of remaining files is stopped. This was not the case with 5.3 version. I found this feature handy. Do you think that it would be good to implement this behavior also for V6 version of freeview?
Regards,
Antonin Skoch
it shouldn't be, but it seems like it was complaining that the input wasn't "conformed". Can you run mri_info on the volume after you edited it?
On Fri, 6 Jan 2017, Lucette Cysique wrote:
Dear Bruce Many thanks We are doing the aseg edits in Freeview. Is that an issue? I will use the command line you sent Many thanks Lucette
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of freesurfer-request@nmr.mgh.harvard.edu freesurfer-request@nmr.mgh.harvard.edu Sent: Friday, January 6, 2017 4:00:04 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Freesurfer Digest, Vol 155, Issue 8 Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu
To subscribe or unsubscribe via the World Wide Web, visit https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu
You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu
When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..."
Today's Topics:
1. V6 beta freeview - stopped loading remaining files when one is missing (Antonin Skoch) 2. freeview V6beta - reposition surface option (Antonin Skoch) 3. Re: mri_convert error message (Bruce Fischl) 4. Re: V6 beta freeview - stopped loading remaining files when one is missing (Ruopeng Wang) 5. Re: 6.0.0 release (Tobias Granberg) 6. Problem with freeview (Jennifer Szeto) 7. Re: minor edits to aseg lead to exist with errors in about 25% of my scans (Lucette Cysique) 8. Re: minor edits to aseg lead to exist with errors in about 25% of my scans (Bruce Fischl) 9. Re: Problem with freeview (Ruopeng Wang) 10. Re: Problem with freeview (Jennifer Szeto) 11. Postdoctoral Fellow in Machine Learning in Neuroimaging (Thomas Yeo) 12. Postdoctoral fellow in mental disorder subtypes (Thomas Yeo) 13. Fwd: REMINDER: OHBM 2017 Call For Council Nominations (Douglas N Greve)
Message: 1 Date: Wed, 4 Jan 2017 21:38:53 +0100 From: Antonin Skoch ansk@ikem.cz Subject: [Freesurfer] V6 beta freeview - stopped loading remaining files when one is missing To: freesurfer@nmr.mgh.harvard.edu Message-ID: 1798454155-32478@posta.medicon.cz Content-Type: text/plain; charset="utf-8"
Dear experts,
with V6 beta version of freeview I encountered, that when some input file specified in command line is missing, the loading of remaining files is stopped. This was not the case with 5.3 version. I found this feature handy. Do you think that it would be good to implement this behavior also for V6 version of freeview?
Regards,
Antonin Skoch
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Lucette Cysique