hi doug,

here is the error, it told me there was a problem in an if statement somewhere.

if you use smooth = 2.0 instead of 2 you will get the error.

cheers,

satra

--- [snip] fslmerge -t /mindhive/gablab/users/keshavan/scripts/BrainImagingPipeline s/utils/test/fmunwarp/temp/ph.nii.gz /mindhive/gablab/users/keshava n/scripts/BrainImagingPipelines/utils/test/fmunwarp/temp/ph.zeros.nii.gz /mindhive/gablab/users/keshavan/scripts/BrainImagingPipelines/utils/test/fm unwarp/temp/dph Masking with /mindhive/gablab/users/keshavan/scripts/BrainImagingPipeline s/utils/test/fmunwarp/temp/brain.nii.gz Standard error: if: Badly formed number. Return code: 1 Interface EPIDeWarp failed to run. ---

On Mon, Mar 26, 2012 at 10:39 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu

wrote:

what does it do? What is the terminal output?

Satrajit Ghosh wrote:

...

epidewarp.fsl does not take non-integer smoothing kernel sizes.

cheers,

satra

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