New subject: Dimension Mismatch Error

3 Oct 2011

      Hi Doug,
I've attached the mri_info output on the eccen and polar images as well as
the mris_info on the lh.sphere surface
Thanks.
Michelle
On Mon, Oct 3, 2011 at 2:38 PM, Douglas N Greve
greve@nmr.mgh.harvard.eduwrote:
...
Can you send me the result of running mri_info on
 eccen/real.nii
 eccen/imag.nii
 polar/real.nii
 polar/imag.nii
in the /usr/local/freesurfer/**subjects/retinotopy/sj12/bold/**rtopy.self.lh
directory?
And the result of
mris_info /usr/local/freesurfer/**subjects/retinotopy/sj12/surf/**
lh.sphere
doug
Michelle Umali wrote:
...
Hi Doug,
I've attached the output from running fieldsign-sess.
Thanks for all your help.
Michelle
On Mon, Oct 3, 2011 at 12:59 PM, Douglas N Greve <
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.**edugreve@nmr.mgh.harvard.edu>>
wrote:
Michelle, before you do that, can you run the offending program
   with -debug and send me the (copious) terminal output? Your anat
   should not have to be re-run.
doug
Michelle Umali wrote:
   Hi Bruce,
   Will this undo my wm and pial edits?

   Thanks.
   Michelle

   On Sat, Oct 1, 2011 at 3:37 PM, Bruce Fischl
   <fischl@nmr.mgh.harvard.edu
   <mailto:fischl@nmr.mgh.**harvard.edu <fischl@nmr.mgh.harvard.edu>>
   <mailto:fischl@nmr.mgh.**harvard.edu <fischl@nmr.mgh.harvard.edu>

   <mailto:fischl@nmr.mgh.**harvard.edu <fischl@nmr.mgh.harvard.edu>>>>

wrote:
      try running

      recon-all  -s subject -make all

      and leave the -dontrun off. It should bring everything up
   to date

      Bruce

      On Sat, 1 Oct 2011, Michelle Umali wrote:

          Dear Freesurfers,
          I'm still getting a MRISripZeros() and MRIScopyMRI Surf/src
          mismatch error
          when running fieldsign-sess.  You suggested that this
   problem
          was due to the
          surfaces being out of synch.  When I ran  recon-all -s
   subject
          -make all
          -dontrun, I saw that several steps had not run.  The data
          looked alright and
          the number of vertices matched when I ran -vno-check.

          The mismatch error is still occurring, and I don't know
   how to
          proceed.

          Please suggest steps that I should take.

          Thanks.
          Michelle

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Re: [Freesurfer] Dimension Mismatch Error

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