Re: [Freesurfer] Dimension Mismatch Error

Hi Doug, I've attached the mri_info output on the eccen and polar images as well as the mris_info on the lh.sphere surface

Thanks. Michelle

On Mon, Oct 3, 2011 at 2:38 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:

Can you send me the result of running mri_info on eccen/real.nii eccen/imag.nii polar/real.nii polar/imag.nii in the /usr/local/freesurfer/**subjects/retinotopy/sj12/bold/**rtopy.self.lh directory?

And the result of mris_info /usr/local/freesurfer/**subjects/retinotopy/sj12/surf/** lh.sphere

doug

Michelle Umali wrote:

...

Hi Doug, I've attached the output from running fieldsign-sess.

Thanks for all your help. Michelle

On Mon, Oct 3, 2011 at 12:59 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.**edugreve@nmr.mgh.harvard.edu>> wrote:

Michelle, before you do that, can you run the offending program with -debug and send me the (copious) terminal output? Your anat should not have to be re-run.

doug

Michelle Umali wrote:

   Hi Bruce,
   Will this undo my wm and pial edits?

   Thanks.
   Michelle

   On Sat, Oct 1, 2011 at 3:37 PM, Bruce Fischl
   <fischl@nmr.mgh.harvard.edu
   <mailto:fischl@nmr.mgh.**harvard.edu <fischl@nmr.mgh.harvard.edu>>
   <mailto:fischl@nmr.mgh.**harvard.edu <fischl@nmr.mgh.harvard.edu>

   <mailto:fischl@nmr.mgh.**harvard.edu <fischl@nmr.mgh.harvard.edu>>>>

wrote:

      try running


      recon-all  -s subject -make all

      and leave the -dontrun off. It should bring everything up
   to date

      Bruce



      On Sat, 1 Oct 2011, Michelle Umali wrote:

          Dear Freesurfers,
          I'm still getting a MRISripZeros() and MRIScopyMRI Surf/src
          mismatch error
          when running fieldsign-sess.  You suggested that this
   problem
          was due to the
          surfaces being out of synch.  When I ran  recon-all -s
   subject
          -make all
          -dontrun, I saw that several steps had not run.  The data
          looked alright and
          the number of vertices matched when I ran -vno-check.

          The mismatch error is still occurring, and I don't know
   how to
          proceed.

          Please suggest steps that I should take.

          Thanks.
          Michelle





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