Dear FreeSurfer experts,
is it possible to do a vertex-wise analysis on ROIs? When I extract the values per subject for (e.g.) the superior temporal gyrus grom the aparc file it is a pretty big region to get only one value. I would like to analyze it on a vertex level so I can see where exactly the effects are.
I'd be really happy for any suggestions! Thank you Clara
You can do a vertex-wise analysis in any region you like (e.g. cortex, superior temporal cortex, etc.)
check the "--label" option of mri_glmfit. see also:
https://surfer.nmr.mgh.harvard.edu/fswiki/BuildYourOwnMonteCarlo
-joost http://www.cibersam.es/grupos/grupo-de-investigacion/ficha-personal?id=14486
On Wed, Jan 11, 2017 at 2:51 PM, Clara Kühn ckuehn@cbs.mpg.de wrote:
Dear FreeSurfer experts,
is it possible to do a vertex-wise analysis on ROIs? When I extract the values per subject for (e.g.) the superior temporal gyrus grom the aparc file it is a pretty big region to get only one value. I would like to analyze it on a vertex level so I can see where exactly the effects are.
I'd be really happy for any suggestions! Thank you Clara
-- Clara Kühn, Phd Student
Max-Planck-Institute for Human Cognitive and Brain Science Department of Neuropsychology Stephanstrasse 1A 04103 Leipzig, Germany
Phone: +49 341 - 9940 2271 Fax: +49 341 - 9940 2260 Web: www.cbs.mpg.de E-Mail: ckuehn@cbs.mpg.de
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
thank you! I will give that a try.
----- Ursprüngliche Mail ----- Von: "Joost Janssen" joost.janssen76@gmail.com An: "ckuehn" ckuehn@cbs.mpg.de, "freesurfer" freesurfer@nmr.mgh.harvard.edu Gesendet: Mittwoch, 11. Januar 2017 15:07:36 Betreff: Re: [Freesurfer] vertex-wise ROI analysis
You can do a vertex-wise analysis in any region you like (e.g. cortex, superior temporal cortex, etc.)
check the "--label" option of mri_glmfit. see also:
https://surfer.nmr.mgh.harvard.edu/fswiki/BuildYourOwnMonteCarlo
-joost http://www.cibersam.es/grupos/grupo-de-investigacion/ficha-personal?id=14486
On Wed, Jan 11, 2017 at 2:51 PM, Clara Kühn ckuehn@cbs.mpg.de wrote:
Dear FreeSurfer experts,
is it possible to do a vertex-wise analysis on ROIs? When I extract the values per subject for (e.g.) the superior temporal gyrus grom the aparc file it is a pretty big region to get only one value. I would like to analyze it on a vertex level so I can see where exactly the effects are.
I'd be really happy for any suggestions! Thank you Clara
-- Clara Kühn, Phd Student
Max-Planck-Institute for Human Cognitive and Brain Science Department of Neuropsychology Stephanstrasse 1A 04103 Leipzig, Germany
Phone: +49 341 - 9940 2271 Fax: +49 341 - 9940 2260 Web: www.cbs.mpg.de E-Mail: ckuehn@cbs.mpg.de
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Clara Kühn -
Joost Janssen