It is also strange that the white and pial are out of synch because they are produced at the same time. Did you run out of space on that drive?

Jenni Pacheco wrote:

Hi Derin,

It's probably that you have done something out of order. The easiest way for me to check this is to see the latest set of processing as dictated by the subject's scripts/recon-all-status.log. If you paste that into an email I can see what happened.

Oh, also, were you running this on just the LH - have you processed the RH yet?

Jenni

On Mon, 11 Jun 2007, Derin Cobia wrote:

...

I'm getting the following error on several of my subjects during the aparc2aseg stage:

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#@# AParc-to-ASeg Sat Jun 9 12:19:58 EDT 2007 /disk/eli/freesurfer/conte_flash/5111

mri_aparc2aseg --s 5111 --ribbon

SUBJECTS_DIR /disk/eli/freesurfer/conte_flash subject 5111 outvol /disk/eli/freesurfer/conte_flash/5111/mri/aparc+aseg.mgz useribbon 1 baseoffset 0

Reading lh white surface /disk/eli/freesurfer/conte_flash/5111/surf/lh.white

Building hash of lh white

Reading lh pial surface /disk/eli/freesurfer/conte_flash/5111/surf/lh.pial

Building hash of lh pial ERROR: lh white and pial have a different number of vertices (190233,189041) Linux eli 2.6.9-34.0.1.ELsmp #1 SMP Wed May 17 16:59:36 EDT 2006 x86_64 x86_64 x86_64 GNU/Linux

recon-all exited with ERRORS at Sat Jun 9 12:20:07 EDT 2007 _______________________________

Do I need to reprocess from a certain stage on, or redo the whole thing? What would have caused this (it didn't happen with some other subjects during the same process batch). I couldn't find any info on this in the archive or wiki, I'm running 3.0.4.

Thanks,

Derin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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