External Email - Use Caution
Hi
When running recon-all autorecon2, on a single subject with (Macbook Pro 10.15.6 (19G2021), freesurfer-darwin-macOS-7.1.0-20200511-813297b)
it handles the rh.curv without a problem, but for the lh kicks out this error:
/Users...$subj.../surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm $subj lh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ $subj./lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture...error: No such file or directory error: MRISreadCurvature: could not open /Users/$subj./surf/lh.curv
***WARNING!*** Some error has occurred while reading 'lh.curv'. This might be due a vertex incompatibility between the surface 'lh.smoothwm' and curv 'lh.curv'.
You might be able to correct this by re-running 'mris_make_surfaces' on this dataset.
Skipping this (and any remaining) curvature files. Any measurements / calcuations that depend on the curvature file will be skipped. ************* Note /Users/$subj./surf/lh.curv does exist in the subject's surf folder.
I ran it twice just to be sure. I don't find an answer for the problem in the freesurfer list. Any guidance will be much appreciated! Cheers James Hartzell, PhD (2x) Donostia-San Sebatián, Spain
Hi James,
Can you send the full recon-all.log for this subject?
Thanks, Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of James Hartzell james.hartzell@gmail.com Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Thursday, September 3, 2020 at 10:20 AM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] autorecon2, error MRISreadCurvature:
External Email - Use Caution Hi
When running recon-all autorecon2, on a single subject with (Macbook Pro 10.15.6 (19G2021), freesurfer-darwin-macOS-7.1.0-20200511-813297b)
it handles the rh.curv without a problem, but for the lh kicks out this error:
/Users...$subj.../surf \n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm $subj lh curv sulc \n Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ $subj./lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture...error: No such file or directory error: MRISreadCurvature: could not open /Users/$subj./surf/lh.curv
***WARNING!*** Some error has occurred while reading 'lh.curv'. This might be due a vertex incompatibility between the surface 'lh.smoothwm' and curv 'lh.curv'.
You might be able to correct this by re-running 'mris_make_surfaces' on this dataset.
Skipping this (and any remaining) curvature files. Any measurements / calcuations that depend on the curvature file will be skipped. ************* Note /Users/$subj./surf/lh.curv does exist in the subject's surf folder.
I ran it twice just to be sure. I don't find an answer for the problem in the freesurfer list. Any guidance will be much appreciated! Cheers James Hartzell, PhD (2x) Donostia-San Sebatián, Spain
freesurfer@nmr.mgh.harvard.edu
-
Hoopes, Andrew -
James Hartzell