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Dear Freesurfer experts,
As indicated here https://secure-web.cisco.com/1U4b2EkUfPD8P1X6LdxE7H-WrQG5N2w5Lnh1FY6jUHMlzIG... I am rerunning the code below to creare the file norm.mgz: mri_em_register -mask brain.mgz -p .5 nu.mgz \ $FREESURFER_HOME/average/RB40_talairach_2005-07-20.gca \ transforms/talairach.lta
I got this error: == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/opt/freesurfer/6.0/average/RB40_talairach_2005-07-20.gca'... GCAread(/opt/freesurfer/6.0/average/RB40_talairach_2005-07-20.gca): could not open file No such file or directory mri_em_register: could not open GCA /opt/freesurfer/6.0/average/RB40_talairach_2005-07-20.gca. No such file or directory
This solution above does not work for me because the file : RB40_talairach_2005-07-20.gca does not exist in /opt/freesurfer/6.0/average I thought maybe the problem is that the file RB40_talairach_2005-07-20.gca is called now in a different way?
Please could you tell me how the file “RB40_talairach_2005-07-20.gca” is called for Freesurfer v 6.0? there are two files in the folder “average” that terminate with .gca: RB_all_2016-05-10.vc700.gca or RB_all_withskull_2016-05-10.vc700.gca
Thank you very much in advance Best regards Ileana Camerino
PhD candidate Donders Institute for Brain, Cognition and Behaviour
Centre for Cognition Spinozabuilding Room B02.25 Montessorilaan 3, 6525 HR Nijmegen The Netherlands Tel. +31-24 3612618
Try using RB_all_2016-05-10.vc700.gca instead
On 12/22/2020 5:54 AM, Camerino, I.L. (Ileana) wrote:
freesurfer@nmr.mgh.harvard.edu