R: Re: R: Re: problem with nu_correct - Freesurfer

25 Jul 2013

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Hello Zeke,
I must make a clarification: I use
freesurfer on a PC cluster.
I have submitted the same image several
times and on different machines.
Sometimes it was killed sometimes
not.
If I submit a second time the failed
job it may happen that it is terminated with success.
thank you very much
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----Messaggio originale----
Da: zkaufman@nmr.mgh.harvard.edu
Data: 24-lug-2013 21.53
A: "Andrea Tateo"andrea.tateo@virgilio.it
Cc: freesurfer@nmr.mgh.harvard.edu
Ogg: Re: R: Re: [Freesurfer] problem with nu_correct
Andrea,
Hmmm. I am not able to duplicate this error on my end using local data. 
A few things:
1) What happens when you type "nu_evaluate -help"? Do you get help 
output or does it crash?
2) Does this error occur for all subjects or just this one used for this 
particular recon?
3) Does the brain image look "normal", meaning is there anything 
obviously wrong with the input data, which you can see by opening it 
with Freeview?
-Zeke
On 07/24/2013 11:22 AM, Andrea Tateo wrote:
...
Hello zkaufman,
thanks for your involvement
Andrea
----Messaggio originale----
Da: zkaufman@nmr.mgh.harvard.edu
Data: 24-lug-2013 16.52
A: "Andrea Tateo"andrea.tateo@virgilio.it
Cc: freesurfer@nmr.mgh.harvard.edu
Ogg: Re: [Freesurfer] problem with nu_correct
Hello Andrea,
Can you please attach the entire recon-all.log file? It will be located
in $SUBJECT_DIR/subject_name/scripts/recon-all.log
-Zeke
On 07/24/2013 09:35 AM, Andrea Tateo wrote:
...
Hi FreeSurfer expert,
I have a problem with command "recon-all".
In recon-all.log I can to read
nu_correct: crashed while running nu_evaluate (termination status=9)
Thank for your help

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