[Freesurfer] Gcuts erasing voxels within the ventricles

Elijah Mak

9 Aug 2017 9 Aug '17

4:44 a.m.

Hi Freesurfer Team,

I am using gcut to improve the skull stripping on some subjects. I noticed that it is also removing some of the voxels in the ventricles of the brainmask.mgz (picture attached). Is this normal behaviour?

Thanks for your time.

Best Wishes, Elijah

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