Hello,
I'm new to freesurfer and just downloaded and installed it on my dual boot windows/linux (centos release 5.5). I went through the instructions to check if everything is properly installed. Everything seemed to be fine except for tksurfer. When I enter the tksurfer bert rh pial command, tksurfer does launch but it only displays a very small sliver of a brain surface. Is this a common problem? Is something wrong with my installation? Any suggestions would be great. Thanks!
Peter Glynn
Can you describe the hardware / video card you are using? --------------------------------------------------------------------- Pedro Paulo de Magalhães Oliveira Junior Netfilter & SpeedComm Telecom -- www.netfilter.com.br -- For mobile: http://itunes.apple.com/br/artist/netfilter/id365306441
On Thu, Sep 22, 2011 at 12:12, Peter Glynn pglynn@bu.edu wrote:
Hello,
I'm new to freesurfer and just downloaded and installed it on my dual boot windows/linux (centos release 5.5). I went through the instructions to check if everything is properly installed. Everything seemed to be fine except for tksurfer. When I enter the tksurfer bert rh pial command, tksurfer does launch but it only displays a very small sliver of a brain surface. Is this a common problem? Is something wrong with my installation? Any suggestions would be great. Thanks!
Peter Glynn
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Interesting. I've had this problem trying to view the data on my dual boot Windows PC by remotely login with SSH to the linux server while running Xming or Hummingbird Exceed on the PC side. (Output image attached). Could it be some 3D rendering issue?
I have no problem viewing the surfaces from my local ubuntu linux running freesurfer. tkmedit displays volumes properly. Jim
________________________________
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Peter Glynn Sent: Thu 9/22/2011 10:12 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] tksurfer display
Hello,
I'm new to freesurfer and just downloaded and installed it on my dual boot windows/linux (centos release 5.5). I went through the instructions to check if everything is properly installed. Everything seemed to be fine except for tksurfer. When I enter the tksurfer bert rh pial command, tksurfer does launch but it only displays a very small sliver of a brain surface. Is this a common problem? Is something wrong with my installation? Any suggestions would be great. Thanks!
Peter Glynn
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
I am using an nVidia Quadro NVS 295 video card with an Intel(R) Xeon(R) CPU E5530 @2.4 GHz
On Thu, Sep 22, 2011 at 11:37 AM, Alexopoulos, Dimitrios < Alexopoulos_D@kids.wustl.edu> wrote:
Interesting. I've had this problem trying to view the data on my dual boot Windows PC by remotely login with SSH to the linux server while running Xming or Hummingbird Exceed on the PC side. (Output image attached). Could it be some 3D rendering issue?
I have no problem viewing the surfaces from my local ubuntu linux running freesurfer. tkmedit displays volumes properly. Jim
*From:* freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Peter Glynn *Sent:* Thu 9/22/2011 10:12 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] tksurfer display
Hello,
I'm new to freesurfer and just downloaded and installed it on my dual boot windows/linux (centos release 5.5). I went through the instructions to check if everything is properly installed. Everything seemed to be fine except for tksurfer. When I enter the tksurfer bert rh pial command, tksurfer does launch but it only displays a very small sliver of a brain surface. Is this a common problem? Is something wrong with my installation? Any suggestions would be great. Thanks!
Peter Glynn
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
attached find the output image. It looks very similar to Jim's, just rotated 180 degrees.
On Thu, Sep 22, 2011 at 11:37 AM, Alexopoulos, Dimitrios < Alexopoulos_D@kids.wustl.edu> wrote:
Interesting. I've had this problem trying to view the data on my dual boot Windows PC by remotely login with SSH to the linux server while running Xming or Hummingbird Exceed on the PC side. (Output image attached). Could it be some 3D rendering issue?
I have no problem viewing the surfaces from my local ubuntu linux running freesurfer. tkmedit displays volumes properly. Jim
*From:* freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Peter Glynn *Sent:* Thu 9/22/2011 10:12 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] tksurfer display
Hello,
I'm new to freesurfer and just downloaded and installed it on my dual boot windows/linux (centos release 5.5). I went through the instructions to check if everything is properly installed. Everything seemed to be fine except for tksurfer. When I enter the tksurfer bert rh pial command, tksurfer does launch but it only displays a very small sliver of a brain surface. Is this a common problem? Is something wrong with my installation? Any suggestions would be great. Thanks!
Peter Glynn
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
We worked on this months ago and decided to locally install linux on our dual boot PCs rather than remotely accessing data generated on our linux server via Windows (via SHH with Exceed or Xming).
Perhaps there is an OpenGL issue? JIm
________________________________
From: Peter Glynn [mailto:pglynn@bu.edu] Sent: Thu 9/22/2011 11:21 AM To: Alexopoulos, Dimitrios Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] tksurfer display
attached find the output image. It looks very similar to Jim's, just rotated 180 degrees.
On Thu, Sep 22, 2011 at 11:37 AM, Alexopoulos, Dimitrios Alexopoulos_D@kids.wustl.edu wrote:
Interesting. I've had this problem trying to view the data on my dual boot Windows PC by remotely login with SSH to the linux server while running Xming or Hummingbird Exceed on the PC side. (Output image attached). Could it be some 3D rendering issue? I have no problem viewing the surfaces from my local ubuntu linux running freesurfer. tkmedit displays volumes properly. Jim
________________________________
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Peter Glynn Sent: Thu 9/22/2011 10:12 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] tksurfer display Hello, I'm new to freesurfer and just downloaded and installed it on my dual boot windows/linux (centos release 5.5). I went through the instructions to check if everything is properly installed. Everything seemed to be fine except for tksurfer. When I enter the tksurfer bert rh pial command, tksurfer does launch but it only displays a very small sliver of a brain surface. Is this a common problem? Is something wrong with my installation? Any suggestions would be great. Thanks! Peter Glynn
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
I found this site for the type of problem we are having with tksurfer
http://surfer.nmr.mgh.harvard.edu/fswiki/TksurferDisplayProblems
Jim
________________________________
From: Peter Glynn [mailto:pglynn@bu.edu] Sent: Thu 9/22/2011 11:21 AM To: Alexopoulos, Dimitrios Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] tksurfer display
attached find the output image. It looks very similar to Jim's, just rotated 180 degrees.
On Thu, Sep 22, 2011 at 11:37 AM, Alexopoulos, Dimitrios Alexopoulos_D@kids.wustl.edu wrote:
Interesting. I've had this problem trying to view the data on my dual boot Windows PC by remotely login with SSH to the linux server while running Xming or Hummingbird Exceed on the PC side. (Output image attached). Could it be some 3D rendering issue? I have no problem viewing the surfaces from my local ubuntu linux running freesurfer. tkmedit displays volumes properly. Jim
________________________________
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Peter Glynn Sent: Thu 9/22/2011 10:12 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] tksurfer display Hello, I'm new to freesurfer and just downloaded and installed it on my dual boot windows/linux (centos release 5.5). I went through the instructions to check if everything is properly installed. Everything seemed to be fine except for tksurfer. When I enter the tksurfer bert rh pial command, tksurfer does launch but it only displays a very small sliver of a brain surface. Is this a common problem? Is something wrong with my installation? Any suggestions would be great. Thanks! Peter Glynn
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
I have added this answer to the FAQ: http://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/FAQ
--------------------------------------------------------------------- Pedro Paulo de Magalhães Oliveira Junior Netfilter & SpeedComm Telecom -- www.netfilter.com.br -- For mobile: http://itunes.apple.com/br/artist/netfilter/id365306441
On Thu, Sep 22, 2011 at 14:33, Alexopoulos, Dimitrios < Alexopoulos_D@kids.wustl.edu> wrote:
I found this site for the type of problem we are having with tksurfer
http://surfer.nmr.mgh.harvard.edu/fswiki/TksurferDisplayProblems
Jim
*From:* Peter Glynn [mailto:pglynn@bu.edu] *Sent:* Thu 9/22/2011 11:21 AM *To:* Alexopoulos, Dimitrios *Cc:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] tksurfer display
attached find the output image. It looks very similar to Jim's, just rotated 180 degrees.
On Thu, Sep 22, 2011 at 11:37 AM, Alexopoulos, Dimitrios < Alexopoulos_D@kids.wustl.edu> wrote:
Interesting. I've had this problem trying to view the data on my dual boot Windows PC by remotely login with SSH to the linux server while running Xming or Hummingbird Exceed on the PC side. (Output image attached). Could it be some 3D rendering issue?
I have no problem viewing the surfaces from my local ubuntu linux running freesurfer. tkmedit displays volumes properly. Jim
*From:* freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Peter Glynn *Sent:* Thu 9/22/2011 10:12 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] tksurfer display
Hello,
I'm new to freesurfer and just downloaded and installed it on my dual boot windows/linux (centos release 5.5). I went through the instructions to check if everything is properly installed. Everything seemed to be fine except for tksurfer. When I enter the tksurfer bert rh pial command, tksurfer does launch but it only displays a very small sliver of a brain surface. Is this a common problem? Is something wrong with my installation? Any suggestions would be great. Thanks!
Peter Glynn
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Alexopoulos, Dimitrios -
Pedro Paulo de Magalhães Oliveira Junior -
Peter Glynn