Hi Bruce,

I re-ran the -cortparc step with the current dev version freesurfer-Linux-centos6_x86_64-dev-20151209

It took ~6 hours and the error is still the same. It seems to run through the left hemisphere, but crashes on the right one.

Cheers! Natalia

On 09 Dec 2015, at 14:37, Bruce Fischl <fischl@nmr.mgh.harvard.edumailto:fischl@nmr.mgh.harvard.edu> wrote:

HI Natalia

can you try the dev version? I'm pretty sure I fixed this. You can just rerun mris_ca_label. We'll hopefully be cutting a new stable 6 sometime soon

cheers Bruce

On Wed, 9 Dec 2015, Zaretskaya, Natalia wrote:

Dear all, I am running recon-all with FreeSurfer 6 stable version on launchpad and have it exiting with errors with all of my 43 brains, always at the same stage (-cortparc). The same brains used to run through recon-all smoothly with the dev version just a month or so ago, and I am not doing anything essentially different than before, except using FreeSurfer 6, so I am wondering what’s wrong. The output of recon-all before the error looks o.k. I attached an example recon-all.log file. Many thanks in advance for your help! Natalia _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer