Do you have write permissions to the output dir? I noticed a perm error in the log. The recon-all.log file has the permission: -rw-rw-r-- 1 guest phd

doug

On 11/06/2012 03:53 PM, Berg, S.F. van den wrote:

Hi Doug and Bruce

There is enough disc space. A text file is attached, this file is created with the "recon-all -s 0050 -qcache |& tee mylog.txt" command. I try the "recon-all -s 0050 -qcache" command. The command start to run but finished with errors.

Have you got any idea of the problem in this case? Also the recon-all.log file is attached (subject 0050).

Thanks,

Stan ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: 05 November 2012 19:37 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] qcache error

Do run out of disk space? Also, please send terminal output in a text file rather than as a snapshot. You can do this with

recon-all ... |& tee mylog.txt

doug

On 11/05/2012 10:21 AM, Berg, S.F. van den wrote:

...

Dear Freesurfer experts,

I have got a problem with the qcache function. I have already runned 150 subjects with the recon-all command. Before i can work with the statistical program qdec i have to smooth the subjects. I want to smooth them with the command: recon-all -s<subject> -qcache. The command start to run but finished with errors. A overview of the terminal output is attached to this email in JPEG format. What is the problem in this case?

further information about freesurfer version:

recon-all -version: Id: recon-all, v 1.373 2011/03/15 00:43:47 mreuter Exp $

We run FreeSurfer-Linux-centos5_x86_64-dev-201110315 under Debian Squeeze.

Thanks a lot,

Stan van den Berg

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