Hi, Freeview does not look up SUBJECT environment variable. So you will need to cd into your subject directory before running the command, or use the full path in the command for every file.

Ruopeng

On 11/7/12 9:50 AM, Catherine Bois wrote:

Hi, I am trying to use freeview to look at wm/brainmask etc however the command wont work. The command Im suing is freeview -v wm1_edits_before/mri/wm.mgz:colormap=heat:opacity=0.4 wm1_edits_before/mri/brainmask.mgz \ -f wm1_edits_before/surf/lh.white:edgecolor=blue wm1_edits_before/surf/lh.pial:edgecolor=red \ wm1_edits_before/surf/rh.white:edgecolor=blue wm1_edits_before/surf/rh.pial:edgecolor=red

(but i am exchanging paths for my own data). However, it keeps saying that operation console failed, and for some reason, even though Ive set the subject directory to where the files are kept it

keeps looking in my home directory. I recently attended a course in freesurfer, but this problem was not explained? Grateful for help.

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