Hi,
We would like to visually display some t-values onto a brain using the 2009 Destrieux freesurfer parcellations. We have our own t-values for each parcellation. We would like to display a color-coded spm map for all parcellations, and would like each parcellation to represent the same intensity, instead of voxel by voxel, as was done by Watkins et al. (2001).
Has anyone done this? Or have a clue where to find the relevant options?
Thank you,
David Vazquez
Watkins, K.E., Paus, T., Lerch, J.P., Zijdenbos, A., Collins, D.L., Neelin, P., Taylor, J., Worsley., K.J., and Evans, A.C. (2001). Stuctural Asymmetries in the human brain: A voxel-pased Statistical Analysis of 142 MRI scans. *Cerebral Cortex, 11*(9), 868-877.
Try touching ?h.orig.nofix, ie, touch rh.orig.nofix lh.orig.nofix
then re-running with -make all
doug
On 08/14/2012 05:08 PM, David Vazquez wrote:
Hi,
We would like to visually display some t-values onto a brain using the 2009 Destrieux freesurfer parcellations. We have our own t-values for each parcellation. We would like to display a color-coded spm map for all parcellations, and would like each parcellation to represent the same intensity, instead of voxel by voxel, as was done by Watkins et al. (2001).
Has anyone done this? Or have a clue where to find the relevant options?
Thank you,
David Vazquez
Watkins, K.E., Paus, T., Lerch, J.P., Zijdenbos, A., Collins, D.L., Neelin, P., Taylor, J., Worsley., K.J., and Evans, A.C. (2001). Stuctural Asymmetries in the human brain: A voxel-pased Statistical Analysis of 142 MRI scans. /Cerebral Cortex, 11/(9), 868-877.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi,
not 100% sure what you want but perhaps this:
http://brainder.org/2011/07/05/freesurfer-brains-in-arbitrary-colours
is what you're looking for?
-joost
On Tue, Aug 14, 2012 at 11:13 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu
wrote:
Try touching ?h.orig.nofix, ie, touch rh.orig.nofix lh.orig.nofix
then re-running with -make all
doug
On 08/14/2012 05:08 PM, David Vazquez wrote:
Hi,
We would like to visually display some t-values onto a brain using the 2009 Destrieux freesurfer parcellations. We have our own t-values for each parcellation. We would like to display a color-coded spm map for all parcellations, and would like each parcellation to represent the same intensity, instead of voxel by voxel, as was done by Watkins et al. (2001).
Has anyone done this? Or have a clue where to find the relevant options?
Thank you,
David Vazquez
Watkins, K.E., Paus, T., Lerch, J.P., Zijdenbos, A., Collins, D.L., Neelin, P., Taylor, J., Worsley., K.J., and Evans, A.C. (2001). Stuctural Asymmetries in the human brain: A voxel-pased Statistical Analysis of 142 MRI scans. /Cerebral Cortex, 11/(9), 868-877.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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