External Email - Use Caution
Dear Bruce and Bram,
After improving the pial surface for my participants, I have seen that some of them do not need control points. My question is: for those ones, should I run -autorecon2 and -autorecon3 or only -autorecon3.
Hi Bruce and Bram, I will try to upload two problematic files. When I told you that I have been editing all my participants I was referring that some of them need more editing than others, and the ones that needed the less I just tried to improve the pial surface not too much, but now the results are better than before.
Thank you in advance for your help. Yours sincerely, Rosalia
Hi Rosalia
you always have to run autorecon3 every time autorecon2 is run
cheers Bruce
On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
Dear Bruce and Bram,
After improving the pial surface for my participants, I have seen that some of them do not need control points. My question is: for those ones, should I run -autorecon2 and -autorecon3 or only -autorecon3.
Hi Bruce and Bram, I will try to upload two problematic files. When I told you that I have been editing all my participants I was referring that some of them need more editing than others, and the ones that needed the less I just tried to improve the pial surface not too much, but now the results are better than before.
Thank you in advance for your help.Yours sincerely, Rosalia
External Email - Use Caution
Hi Bruce,
Thank you for your reply. I am having problems when trying to upload the two files with FTP, it seems the problem is with the directory. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd home/rosalia/Desktop/transfer 550 Failed to change directory. ftp>
On Mon, Dec 3, 2018 at 3:50 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Rosalia
you always have to run autorecon3 every time autorecon2 is run
cheers Bruce
On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionDear Bruce and Bram,
After improving the pial surface for my participants, I have seen that
some of them do not need
control points. My question is: for those ones, should I run -autorecon2
and -autorecon3 or only
-autorecon3.
Hi Bruce and Bram, I will try to upload two problematic files. When I
told you that I have been
editing all my participants I was referring that some of them need more
editing than others, and the
ones that needed the less I just tried to improve the pial surface not
too much, but now the results
are better than before.
Thank you in advance for your help.Yours sincerely, Rosalia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Hi Bruce,
Sorry for double posting. I am advancing, but there is still some point I am missing. I would greatly appreciate your help:
rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd /home/rosalia/Desktop/transferrosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/transfer $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd transfer/incoming 250 Directory successfully changed. ftp> two_different_problems.txt ?Invalid command ftp>
On Mon, Dec 3, 2018 at 4:06 PM Rosalia Dacosta Aguayo rdacostaa@gmail.com wrote:
Hi Bruce,
Thank you for your reply. I am having problems when trying to upload the two files with FTP, it seems the problem is with the directory. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd home/rosalia/Desktop/transfer 550 Failed to change directory. ftp>
On Mon, Dec 3, 2018 at 3:50 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Rosalia
you always have to run autorecon3 every time autorecon2 is run
cheers Bruce
On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionDear Bruce and Bram,
After improving the pial surface for my participants, I have seen that
some of them do not need
control points. My question is: for those ones, should I run
-autorecon2 and -autorecon3 or only
-autorecon3.
Hi Bruce and Bram, I will try to upload two problematic files. When I
told you that I have been
editing all my participants I was referring that some of them need more
editing than others, and the
ones that needed the less I just tried to improve the pial surface not
too much, but now the results
are better than before.
Thank you in advance for your help.Yours sincerely, Rosalia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
That looks fine. You are logged in and you changed the directory. Just put the file now:
put <file>
(In general the command depends on your FTP client, but a 'put' command should be available in every FTP client I guess.)
A general note: you may be better off using a graphical FTP client. Depending on your Operating System, you may want to try something like WinSCP, FileZilla Client, or CyberDuck.
On December 3, 2018 at 4:33 PM Rosalia Dacosta Aguayo rdacostaa@gmail.com wrote:
External Email - Use CautionHi Bruce,
Sorry for double posting. I am advancing, but there is still some point I am missing. I would greatly appreciate your help:
rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd /home/rosalia/Desktop/transferrosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/transfer $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd transfer/incoming 250 Directory successfully changed. ftp> two_different_problems.txt ?Invalid command ftp>
On Mon, Dec 3, 2018 at 4:06 PM Rosalia Dacosta Aguayo rdacostaa@gmail.com wrote:
Hi Bruce,
Thank you for your reply. I am having problems when trying to upload the two files with FTP, it seems the problem is with the directory. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd home/rosalia/Desktop/transfer 550 Failed to change directory. ftp>
On Mon, Dec 3, 2018 at 3:50 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Rosalia
you always have to run autorecon3 every time autorecon2 is run
cheers Bruce
On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionDear Bruce and Bram,
After improving the pial surface for my participants, I have seen that
some of them do not need
control points. My question is: for those ones, should I run
-autorecon2 and -autorecon3 or only
-autorecon3.
Hi Bruce and Bram, I will try to upload two problematic files. When I
told you that I have been
editing all my participants I was referring that some of them need more
editing than others, and the
ones that needed the less I just tried to improve the pial surface not
too much, but now the results
are better than before.
Thank you in advance for your help.Yours sincerely, Rosalia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
is that the right directory/path on your end?
On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
Hi Bruce,
Thank you for your reply. I am having problems when trying to upload the two files with FTP, it seems the problem is with the directory. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php
?? ?
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd home/rosalia/Desktop/transfer 550 Failed to change directory. ftp>
On Mon, Dec 3, 2018 at 3:50 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Rosalia
you always have to run autorecon3 every time autorecon2 is run cheers Bruce On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote: > > External Email - Use Caution > > Dear Bruce and Bram, > > After improving the pial surface for my participants, I have seen that some of them do not need > control points. My question is: for those ones, should I run -autorecon2 and -autorecon3 or only > -autorecon3. > > Hi Bruce and Bram, I will try to upload two problematic files. When I told you that I have been > editing all my participants I was referring that some of them need more editing than others, and the > ones that needed the less I just tried to improve the pial surface not too much, but now the results > are better than before. > > Thank you in advance for your help.Yours sincerely, > Rosalia > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Hi Bruce,
This is the directory where I have the data:
/home/rosalia/Desktop/transfer
And I changed the directory before doing FTP...and then asked again for the directory and I wrote the same directory and then when asked me for the name of the file, I provided the name of the file.txt
Thank you, Rosalia
On Mon, Dec 3, 2018 at 4:51 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
is that the right directory/path on your end?
On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionHi Bruce,
Thank you for your reply. I am having problems when trying to upload the two files with FTP, it
seems
the problem is with the directory. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-
http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php ?? ?
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd home/rosalia/Desktop/transfer 550 Failed to change directory. ftp>
On Mon, Dec 3, 2018 at 3:50 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Rosalia
you always have to run autorecon3 every time autorecon2 is run cheers Bruce On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote: > > External Email - Use Caution > > Dear Bruce and Bram, > > After improving the pial surface for my participants, I have seen that some of them do not need > control points. My question is: for those ones, should I run -autorecon2 and -autorecon3 or only > -autorecon3. > > Hi Bruce and Bram, I will try to upload two problematic files. When I told you that I have been > editing all my participants I was referring that some of them need more editing than others, and the > ones that needed the less I just tried to improve the pial surface not too much, but now the results > are better than before. > > Thank you in advance for your help.Yours sincerely, > Rosalia > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Rosalia,
Within the FTP interface, you need to write "put two_different_problems.txt". It seems like you only wrote the file name. Also, the example we provide is "filename.txt", make sure you write your file name - only include ".txt" if your file has that extension.
Let me know if you have any additional questions.
Best,
Bram
Bram R. Diamond, BSc Research Technician II Laboratory for Computational Neuroimaging Martinos Center for Biomedical Imaging Massachusetts General Hospital 149 13th Street Charlestown, MA 02129 (p): 617-726-6598
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Rosalia Dacosta Aguayo rdacostaa@gmail.com Sent: Monday, December 3, 2018 10:54:53 AM To: Freesurfer support list Subject: Re: [Freesurfer] When no control points are needed...
External Email - Use Caution
Hi Bruce,
This is the directory where I have the data:
/home/rosalia/Desktop/transfer
And I changed the directory before doing FTP...and then asked again for the directory and I wrote the same directory and then when asked me for the name of the file, I provided the name of the file.txt
Thank you, Rosalia
On Mon, Dec 3, 2018 at 4:51 PM Bruce Fischl <fischl@nmr.mgh.harvard.edumailto:fischl@nmr.mgh.harvard.edu> wrote: is that the right directory/path on your end?
On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionHi Bruce,
Thank you for your reply. I am having problems when trying to upload the two files with FTP, it seems the problem is with the directory. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp surfer.nmr.mgh.harvard.eduhttp://surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.eduhttp://surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php
?? ?
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd home/rosalia/Desktop/transfer 550 Failed to change directory. ftp>
On Mon, Dec 3, 2018 at 3:50 PM Bruce Fischl <fischl@nmr.mgh.harvard.edumailto:fischl@nmr.mgh.harvard.edu> wrote: Hi Rosalia
you always have to run autorecon3 every time autorecon2 is run cheers Bruce On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote: > > External Email - Use Caution > > Dear Bruce and Bram, > > After improving the pial surface for my participants, I have seen that some of them do not need > control points. My question is: for those ones, should I run -autorecon2 and -autorecon3 or only > -autorecon3. > > Hi Bruce and Bram, I will try to upload two problematic files. When I told you that I have been > editing all my participants I was referring that some of them need more editing than others, and the > ones that needed the less I just tried to improve the pial surface not too much, but now the results > are better than before. > > Thank you in advance for your help.Yours sincerely, > Rosalia > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Hi Diamond!
I think I did it. Thank you very much!!
-------- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer FSFAST_HOME /usr/local/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer/subjects MNI_DIR /usr/local/freesurfer/mni FSL_DIR /usr/share/fsl/5.0 rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd /home/rosalia/Desktop/transferrosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/transfer $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd transfer/incoming 250 Directory successfully changed. ftp> put two_different_problems.tar.gz local: two_different_problems.tar.gz remote: two_different_problems.tar.gz 200 PORT command successful. Consider using PASV. 150 Ok to send data.
On Mon, Dec 3, 2018 at 6:46 PM Diamond, Bram Ryder < BRDIAMOND@mgh.harvard.edu> wrote:
Hi Rosalia,
Within the FTP interface, you need to write "put two_different_problems.txt". It seems like you only wrote the file name. Also, the example we provide is "filename.txt", make sure you write your file name - only include ".txt" if your file has that extension.
Let me know if you have any additional questions.
Best,
Bram
*Bram R. Diamond, BSc* Research Technician II Laboratory for Computational Neuroimaging Martinos Center for Biomedical Imaging Massachusetts General Hospital 149 13th Street Charlestown, MA 02129 (p): 617-726-6598
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Rosalia Dacosta Aguayo rdacostaa@gmail.com *Sent:* Monday, December 3, 2018 10:54:53 AM *To:* Freesurfer support list *Subject:* Re: [Freesurfer] When no control points are needed...
External Email - Use CautionHi Bruce,
This is the directory where I have the data:
/home/rosalia/Desktop/transfer
And I changed the directory before doing FTP...and then asked again for the directory and I wrote the same directory and then when asked me for the name of the file, I provided the name of the file.txt
Thank you, Rosalia
On Mon, Dec 3, 2018 at 4:51 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
is that the right directory/path on your end?
On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionHi Bruce,
Thank you for your reply. I am having problems when trying to upload the two files with FTP, it
seems
the problem is with the directory. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-
http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php ?? ?
220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd home/rosalia/Desktop/transfer 550 Failed to change directory. ftp>
On Mon, Dec 3, 2018 at 3:50 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Rosalia
you always have to run autorecon3 every time autorecon2 is run cheers Bruce On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote: > > External Email - Use Caution > > Dear Bruce and Bram, > > After improving the pial surface for my participants, I have seen that some of them do not need > control points. My question is: for those ones, should I run -autorecon2 and -autorecon3 or only > -autorecon3. > > Hi Bruce and Bram, I will try to upload two problematic files. When I told you that I have been > editing all my participants I was referring that some of them need more editing than others, and the > ones that needed the less I just tried to improve the pial surface not too much, but now the results > are better than before. > > Thank you in advance for your help.Yours sincerely, > Rosalia > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Diamond, Bram Ryder -
Rosalia Dacosta Aguayo -
ts+ml＠rcmd.org