Hello, I am trying to adapt our ROIs used for tractography into a format that can be used in Freesurfer. I first used mri_cor2label to convert from nifti to .label format. When I run the following makelabels command: mri_label2label --srclabel /cluster/ablood/1/${experiment_directory}/${recons_directory}/avg7cortlabels/Left-SMC.label --srcsubject fsaverage --trglabel /cluster/ablood/1/${experiment_directory}/${recons_directory}/${experiment}_${subject}_${session_number}_recon/label/Left-SMC_${experiment}_${subject}_${session_number}.label --trgsubject ${experiment}_${subject}_${session_number}_recon --regmethod surface --hemi lh

I get the following error: ERROR: there is a vertex in the label that cannot be matched to the surface. This usually occurs when the label and surface are from different subjects or hemispheres or the surface has been changed since the label was created. Label point 0: vno = -1, max = 163842

The standard space label file is in the correct directory, but the native-space label is not created. Any suggestions for how I can get past this error?

Thanks, Jeff

Stefano - Only a subset of BAs are available as labels in FreeSurfer, so I doubt they'll be enough to cover all endings of all tracts. This is the list: http://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps

a.y

On Fri, 5 Apr 2013, stdp82@virgilio.it wrote:

Hi list and Anastasia,

how can I identify which are the Brodmann areas that are the begin and target of each tracts obtained in TRACULA analysis.

Thanks,

Stefano