Hi Jeff
have you looked at the labels? That error frequently means something is wrong in the coordinate transforms. Look at the label in the volume and see if it is where you think it should be.
cheers Bruce
On Sat, 6 Apr 2013, jwaugh@nmr.mgh.harvard.edu wrote:
Hello, I am trying to adapt our ROIs used for tractography into a format that can be used in Freesurfer. I first used mri_cor2label to convert from nifti to .label format. When I run the following makelabels command: mri_label2label --srclabel /cluster/ablood/1/${experiment_directory}/${recons_directory}/avg7cortlabels/Left-SMC.label --srcsubject fsaverage --trglabel /cluster/ablood/1/${experiment_directory}/${recons_directory}/${experiment}_${subject}_${session_number}_recon/label/Left-SMC_${experiment}_${subject}_${session_number}.label --trgsubject ${experiment}_${subject}_${session_number}_recon --regmethod surface --hemi lh
I get the following error: ERROR: there is a vertex in the label that cannot be matched to the surface. This usually occurs when the label and surface are from different subjects or hemispheres or the surface has been changed since the label was created. Label point 0: vno = -1, max = 163842
The standard space label file is in the correct directory, but the native-space label is not created. Any suggestions for how I can get past this error?
Thanks, Jeff
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