Dear FS experts: How can I get the whole cerebral WM and cortex volume.
I am using following command:
asegstats2table --subjects 10001 --segno 2 3 41 42 24 --tablefile 10001_WB_table
It shows that no 2,3, 41,42 segment NO, however, they can be found in the FreeSurferColorLUT.txt file.
thanks Lawrence
Don't use those IDs. Just run it with a single ID (eg, 17). The ouput file will then have a bunch of other columns called CortexVol, SubCortGray, CerebralWhiteMatter, etc
On 03/28/2017 04:01 PM, shi yao wang wrote:
Dear FS experts: How can I get the whole cerebral WM and cortex volume.
I am using following command:
asegstats2table --subjects 10001 --segno 2 3 41 42 24 --tablefile 10001_WB_table It shows that no 2,3, 41,42 segment NO, however, they can be found in the FreeSurferColorLUT.txt file. thanks Lawrence
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shi yao wang