What is aparc+aseg-in-highres.mgz?

On Jun 15, 2011, at 5:16 PM, "Sudhin A. Shah" sut2006@med.cornell.edu wrote:

aparc+aseg-in-highres.mgz

Hi Actually, its the opposite. I'm trying to get a volume from the label aka http://brainybehavior.com/neuroimaging/2010/05/converting-cortical-labels-fr...

On 06/16/11, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:

If you're trying to create a label from a volume then use mri_cor2label. doug

Sudhin A. Shah wrote:

...

Hi,

I am trying to use this for the aparc+aseg-in-highres.mgz file instead of the default aparc

mri_annotation2label --subject AY --hemi lh --outdir $fsfolder/AY/labels  this works

But how do I specify aparc+aseg-in-highres.mgz

I tried --aparc+aseg-in-highres but it was not recognised..

Thank you, S

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Hi Alan - I dont see the instructions on how QDEC handles this? Could you point me out to the wiki page that has this info. Again I dont want to draw manual ROIs instead i want to assign my own value to the color tables corresponding to the aparc labels in FS.

On Wed, Jun 15, 2011 at 4:28 PM, Alan Francis alandarkenergy@gmail.comwrote:

Hi Shashwath:

The QDEC model in FS will allow you to do this. The website has all the details.

best,

Alan

On Wed, Jun 15, 2011 at 5:02 PM, Shashwath Meda shashwath123@gmail.comwrote:

...

Hello Freesurfers - I just finished up with some group ROI analyses on thickness and surface area measures derived from Freesurfer. Basically ran the recon-all command, extracted individual ROI measures from the aparc and aseg files and did my between-group analyses in SPSS. Now, i'd like to display the significant ROIs on the brain with its corresponding p/F value. What would be the easiest and most straightforward way to do this?

Thanks, Shashwath

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