External Email - Use Caution
Dear experts,
I am running segmentHA_T1.sh. In about 3 subjects from 200, the script exits with following error:
In an assignment A(:) = B, the number of elements in A and B must be the same.
Error in segmentSubjectT1_autoEstimateAlveusML (line 1856)
MATLAB:subsassignnumelmismatch Command exited with non-zero status 255
Full log file is attached. I have also uploaded whole subject (named segmentHA_T1_error.tar.gz ), including content of temporary directory hippoSF_T1_v21_right, to your server.
I am using dev version, build 2018-07-28. I am using customized recon-all, but it should not relate to this error. Could you please look at this issue?
Regards,
Antonin Skoch
External Email - Use Caution
Dear Antonin, Can you please send me a listing of the files in: /hydra-db/hydra_io/vypocty/freeSurfer/A_analysis_HPC_PFC/A_links_all/ESO_C00577_20160303_1246_1/tmp/hippoSF_T1_v21_right/ Kind regards, /Eugenio
-- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Antonin Skoch ansk@ikem.cz Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Friday, 17 August 2018 at 18:16 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] segmentHA_T1.sh exits with error
External Email - Use Caution Dear experts,
I am running segmentHA_T1.sh. In about 3 subjects from 200, the script exits with following error:
In an assignment A(:) = B, the number of elements in A and B must be the same.
Error in segmentSubjectT1_autoEstimateAlveusML (line 1856)
MATLAB:subsassignnumelmismatch Command exited with non-zero status 255
Full log file is attached. I have also uploaded whole subject (named segmentHA_T1_error.tar.gz ), including content of temporary directory hippoSF_T1_v21_right, to your server.
I am using dev version, build 2018-07-28. I am using customized recon-all, but it should not relate to this error. Could you please look at this issue?
Regards,
Antonin Skoch
External Email - Use Caution
Dear Antonin, Thanks again for letting us know you had this problem; it turned out to be a small, silly bug in the code. I will fix it ASAP, and the updated code should be on the dev version in the next few days. Cheers, /Eugenio
-- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Antonin Skoch ansk@ikem.cz Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Friday, 17 August 2018 at 18:16 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] segmentHA_T1.sh exits with error
External Email - Use Caution Dear experts,
I am running segmentHA_T1.sh. In about 3 subjects from 200, the script exits with following error:
In an assignment A(:) = B, the number of elements in A and B must be the same.
Error in segmentSubjectT1_autoEstimateAlveusML (line 1856)
MATLAB:subsassignnumelmismatch Command exited with non-zero status 255
Full log file is attached. I have also uploaded whole subject (named segmentHA_T1_error.tar.gz ), including content of temporary directory hippoSF_T1_v21_right, to your server.
I am using dev version, build 2018-07-28. I am using customized recon-all, but it should not relate to this error. Could you please look at this issue?
Regards,
Antonin Skoch
freesurfer@nmr.mgh.harvard.edu
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Antonin Skoch -
Iglesias Gonzalez, Eugenio