Hi Thackery, are you running locallyin the Martinos Center? When I source that env, I have access to unpacksdcmdir. what is your $FREESURFER_HOME variable set to (after sourcing)? doug On 12/13/2012 11:45 AM, thackery@nmr.mgh.harvard.edu wrote:

Hello All, As recently as September we were downloading our fMRI scanning data from Bourget by setting the following freesurfer environment: source /usr/local/freesurfer/nmr-stable51-env

and then unpacking and converting the data to Nifti format using the "unpacksdcmdir" commands: unpackscdcmdir -src "path to subject data" -targ "subject name" -scanonly "subjectname"out

creating a config file, and then:

unpacksdcmdir -src "path to subject data" -targ "subject name" -cfg "subjectname"config

But unpackscdcmdir does not work any longer? We get the message that the command is not found.

Is there a new command that must be used to perform these sorts of functions? I tried dcmunpack and it wasn't recognized either (although I may not have been using that command correctly).

Thank you for any help! Sincerely, Thackery Stern Laboratory at Boston University _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer