Hi Bryna - I see that the error occurs in the corticospinal tract. Any change the top or bottom of the brain is truncated in this subject's scan?

Anastasia. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Goeckner, Bryna bgoeckner@mcw.edu Sent: Thursday, March 17, 2022 11:53 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Reposting TRACULA trac-all -prep finishes with errors

External Email - Use Caution

Attaching config file & link to trac-all.log (trac-all/log is kind of big – so freesurfer listserv blocked email). Hopefully you are able to access them this way.

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mcw.box.com/s/fol3dnv5wjbicyfop0rvhl0sampczfm1https://secure-web.cisco.com/12mEXYhuUBlTXDgjHzPTswpMwBUz25h_vFGE_6-rakbDLzhA78zhVmjjzpHRJ41t3cPhXy3LS4CvSydc4N12DdWNDs4XI5knriU8kSYNeogIj_l7HEliRL9VvZKr-a6RmP6noUihIHhn-80-4O8qhtMEsDDIFVDk6hgmTiHvv6KCDpFEJ2-TX4xK-d6HCcj8YZISTdZWBjoFVQ2ACwNC4DBSN5TcG_t29f_vw7T9pPc_19KAZPKHIwpH0CWGWO6tT-_tvPlOhygDQ6nwEDEcxkncQPXTJO3V9I8nUliLJZ_-yBKE4vhPhkEUQa4HeDgURWEEfrwcUinateQIKKBYVEA/https%3A%2F%2Fmcw.box.com%2Fs%2Ffol3dnv5wjbicyfop0rvhl0sampczfm1

From: Goeckner, Bryna bgoeckner@mcw.edu Date: Monday, February 14, 2022 at 4:42 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: TRACULA trac-all -prep finishes with errors

Hi FreeSurfer Developers,

I am attempting to run data for several subjects through TRACULA using trac-all -prep, but some of them have finished with errors. I have checked registration for all of them and it looks ok.

I am including a link to my config file, and the trac-all.log and trac-all.error files for one subject:

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mcw.box.com/s/jqvvsv9a8ban3ao9gginngpy9aly9xeghttps://secure-web.cisco.com/12G4PlLvcpklUuTh8D_a28ezMniUQvE-KhDPzm3bm138_OWDExx3WUfO2tbXuehAPOo2vrqoNmgKaprwrgGoy82n5v8nPZIE3phtHxUeqdWFUfkc-QJHJe0FO_L3lcY0WTKck8asnfrAq713p5mu36cX2ChPfjBl_4D8WqssWaoBGvw54zGRf3IYXZ9ev6bufB398kC3a-zX1GN4I_9gHtl0_xDMs8Epk-btnGfVPDVrfyBYMKG9bW_nFtM-EEwyXik8iLGdhyi7xMRBdBGxMocSeF8CPLlYZJGzKvmQwZFCJpimMYabmJCwP2uSbzUwlqWiBAKlMA753PrLY6Bhorg/https%3A%2F%2Fmcw.box.com%2Fs%2Fjqvvsv9a8ban3ao9gginngpy9aly9xeg

FreeSurfer version: freesurfer-linux-centos6_x86_64-7.2.0-20210720-aa8f76b

Any help you can give me is greatly appreciated. Thanks!

Bryna Goeckner (she/her)

Graduate Student

Medical College of Wisconsin

Neuroscience Doctoral Program