Hi doug and other FS experts, Thanks very much doug. rh.ttest.thickness.10.mgh is created from the mris_preproc to merge all the subjects' thickness into one file. Then group t-test can be done. I try tksurfer -t rh.ttest.thickness.10.mgh, but the command window echoes its usage. Just as you told me freeview has a new version to see time course for this file. I wonder where I can download it. Thanks doug, All the best. Rujing Zha
2014-03-13
charujing123
发件人：Douglas Greve greve@nmr.mgh.harvard.edu 发送时间：2014-03-12 22:57 主题：Re: [Freesurfer] view time course in freeview 收件人："freesurfer"freesurfer@nmr.mgh.harvard.edu 抄送：
But what is in rh.ttest.thickness.10.mgh? Is it a stack of all your subjects (the file you passed with --y to mri_glmfit)? If so, then add "-t rh.ttest.thickness.10.mgh" to your tksurfer command line. Ruopeng just added something to freeview to do it, but you'd have to get a new version
doug
On 3/11/14 9:46 PM, charujing123 wrote:
Hi doug, sig.mgh is my result for two group t-test on pial thickness of whole brain. So I want to see the time course of thickness of rh.ttest.thickness.10.mgh vertex by vertex. Thanks. All the best. Rujing Zha 2014-03-12
charujing123
发件人：Douglas N Greve greve@nmr.mgh.harvard.edu 发送时间：2014-03-12 00:16 主题：Re: [Freesurfer] view time course in freeview 收件人："freesurfer"freesurfer@nmr.mgh.harvard.edu 抄送：
the time course of what? On 03/11/2014 07:18 AM, charujing123 wrote:
Hi FS experts, For the sig.mgh, can I see the time course vertex by vertex in freeview? Thanks. All the best. Rujing Zha
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Try tksurfer subjectname rh inflated -t rh.ttest.thickness.10.mgh
It prints out the usage so that you can try to figure these things out for yourself, which may be faster than waiting for us to reply
doug
On 03/15/2014 01:33 AM, charujing123 wrote:
Hi doug and other FS experts, Thanks very much doug. rh.ttest.thickness.10.mgh is created from the mris_preproc to merge all the subjects' thickness into one file. Then group t-test can be done. I try tksurfer -t rh.ttest.thickness.10.mgh, but the command window echoes its usage. Just as you told me freeview has a new version to see time course for this file. I wonder where I can download it. Thanks doug, All the best. Rujing Zha 2014-03-13
charujing123
*发件人：*Douglas Greve greve@nmr.mgh.harvard.edu *发送时间：*2014-03-12 22:57 *主题：*Re: [Freesurfer] view time course in freeview *收件人：*"freesurfer"freesurfer@nmr.mgh.harvard.edu *抄送：*
But what is in rh.ttest.thickness.10.mgh? Is it a stack of all your subjects (the file you passed with --y to mri_glmfit)? If so, then add "-t rh.ttest.thickness.10.mgh" to your tksurfer command line. Ruopeng just added something to freeview to do it, but you'd have to get a new version
doug
On 3/11/14 9:46 PM, charujing123 wrote:
Hi doug, sig.mgh is my result for two group t-test on pial thickness of whole brain. So I want to see the time course of thickness of rh.ttest.thickness.10.mgh vertex by vertex. Thanks. All the best. Rujing Zha 2014-03-12
charujing123
*发件人：*Douglas N Greve greve@nmr.mgh.harvard.edu *发送时间：*2014-03-12 00:16 *主题：*Re: [Freesurfer] view time course in freeview *收件人：*"freesurfer"freesurfer@nmr.mgh.harvard.edu *抄送：* the time course of what? On 03/11/2014 07:18 AM, charujing123 wrote:
Hi FS experts, For the sig.mgh, can I see the time course vertex by vertex in
freeview?
Thanks. All the best. Rujing Zha
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi doug It worked. Thanks. All the best. Rujing Zha
2014-03-18
charujing123
发件人：Douglas N Greve greve@nmr.mgh.harvard.edu 发送时间：2014-03-17 23:26 主题：Re: [Freesurfer] Fw: Re: view time course in freeview 收件人："freesurfer"freesurfer@nmr.mgh.harvard.edu 抄送：
Try tksurfer subjectname rh inflated -t rh.ttest.thickness.10.mgh
It prints out the usage so that you can try to figure these things out for yourself, which may be faster than waiting for us to reply
doug
On 03/15/2014 01:33 AM, charujing123 wrote:
Hi doug and other FS experts, Thanks very much doug. rh.ttest.thickness.10.mgh is created from the mris_preproc to merge all the subjects' thickness into one file. Then group t-test can be done. I try tksurfer -t rh.ttest.thickness.10.mgh, but the command window echoes its usage. Just as you told me freeview has a new version to see time course for this file. I wonder where I can download it. Thanks doug, All the best. Rujing Zha 2014-03-13
charujing123
*发件人：*Douglas Greve greve@nmr.mgh.harvard.edu *发送时间：*2014-03-12 22:57 *主题：*Re: [Freesurfer] view time course in freeview *收件人：*"freesurfer"freesurfer@nmr.mgh.harvard.edu *抄送：*
But what is in rh.ttest.thickness.10.mgh? Is it a stack of all your subjects (the file you passed with --y to mri_glmfit)? If so, then add "-t rh.ttest.thickness.10.mgh" to your tksurfer command line. Ruopeng just added something to freeview to do it, but you'd have to get a new version
doug
On 3/11/14 9:46 PM, charujing123 wrote:
Hi doug, sig.mgh is my result for two group t-test on pial thickness of whole brain. So I want to see the time course of thickness of rh.ttest.thickness.10.mgh vertex by vertex. Thanks. All the best. Rujing Zha 2014-03-12
charujing123
*发件人：*Douglas N Greve greve@nmr.mgh.harvard.edu *发送时间：*2014-03-12 00:16 *主题：*Re: [Freesurfer] view time course in freeview *收件人：*"freesurfer"freesurfer@nmr.mgh.harvard.edu *抄送：* the time course of what? On 03/11/2014 07:18 AM, charujing123 wrote:
Hi FS experts, For the sig.mgh, can I see the time course vertex by vertex in
freeview?
Thanks. All the best. Rujing Zha
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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charujing123 -
Douglas N Greve