Dear Freesurfer experts:
We used QDEC to generate the script for cluster-wise correction. After 2 days running, we get error message :
ERROR: opening /usr/local/freesurfer/subjects/qdec/group_thickness_age_rh/csd/mc-z.abs.2.69.j001-rh-Avg-Intercept-thickness.csd
We checked /csd and find the .csd file already there. But in /contrast, there is no results files (i.e., sig.cluster.summary) exist. And a /tmp.mri_glmfit-sim-8708 exist in the main folder. We need your advise to point out what's the problem and how to solve it.
Thank you very much.
How many iterations did it finish? It will be in the .csd file. If it is 10k or more, you run just run mri_glmfit with the --no-sim option.
doug
lordowen wrote:
Dear Freesurfer experts:
We used QDEC to generate the script for cluster-wise correction. After 2 days running, we get error message :
ERROR: opening /usr/local/freesurfer/subjects/qdec/group_thickness_age_rh/csd/mc-z.abs.2.69.j001-rh-Avg-Intercept-thickness.csd
We checked /csd and find the .csd file already there. But in /contrast, there is no results files (i.e., sig.cluster.summary) exist. And a /tmp.mri_glmfit-sim-8708 exist in the main folder. We need your advise to point out what's the problem and how to solve it.
Thank you very much.
freesurfer@nmr.mgh.harvard.edu
-
Douglas N Greve -
lordowen