Re: [Freesurfer] Cluster-wise correction error

How many iterations did it finish? It will be in the .csd file. If it is 10k or more, you run just run mri_glmfit with the --no-sim option.

doug

lordowen wrote:

Dear Freesurfer experts:

We used QDEC to generate the script for cluster-wise correction. After 2 days running, we get error message :

ERROR: opening /usr/local/freesurfer/subjects/qdec/group_thickness_age_rh/csd/mc-z.abs.2.69.j001-rh-Avg-Intercept-thickness.csd

We checked /csd and find the .csd file already there. But in /contrast, there is no results files (i.e., sig.cluster.summary) exist. And a /tmp.mri_glmfit-sim-8708 exist in the main folder. We need your advise to point out what's the problem and how to solve it.

Thank you very much.