Some how the Yeo dimensions got flipped. Usually, this does not matter, but in mri_glmfit it does. You can get around this by running

mri_convert lh.Yeo2011_17NetworksConfidence_N1000.mgz --reorder 2 1 3 lh.Yeo2011_17NetworksConfidence_N1000.reordered.mgz

and using the reordered in mri_glmfit

On 5/20/2021 11:59 AM, Haley Park wrote:

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Thanks for your response! It was in the fsaverage folder when I installed Freesurfer. I also have an .nii file. Could I turn it into an .mgz file and maybe it will have the same dimensions? Could it also be because I am looking at volume and fsaverage is(?) a surface thing?

Haley

On Mon, May 10, 2021 at 11:15 AM Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> wrote:

It is saying that the mask
lhYeo2011_7NetworksConfidence_N1000.mgzdoes not have thee same
dimensions as the input. How was it created? It must be a surface
overlay on fsaverage

On 4/26/2021 6:59 PM, Haley Park wrote:

...

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Hello,

I am trying to run a correlational analysis with glm_fit on a
masked area with the code:

foreach hemi (lh)

foreach smoothness (10)

foreach meas (volume thickness)

mri_glmfit \

--y {$hemi}.{$meas}.{$study}.{$smoothness}.mgh \

--fsgd FSGD/{$study}.fsgd \

--C Contrasts/Scores_Slope.mtx\

--surf fsaverage {$hemi}\

--mask lhYeo2011_7NetworksConfidence_N1000.mgz\

--glmdir {$hemi}.{$meas}.{$study}.{$smoothness}.glmdir

end

end

end


I get the error message:

ERROR: dimension mismatch 1 between y and mask



I've also tried to run it with the .nii file found at
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Any help would be appreciated!


Haley


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