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Hi ,

The following command worked fine under 5.3.0

recon-all -openmp 88 -sd LAB_S00308/standard/20161209_2776_12092016/structural/longitudinal/freesurfer -base template_baseline_1  -tp baseline -tp 1 -all

but now it produces there error

ERROR: It appears that the -base templateID that you passed:        -base template_baseline_1        is an existing regular (cross sectional) run!        Please make sure you pass a new name (not one of        the time points) for the template with -base.        For example, if you are trying to create a -base:

' -base BertTemplate -tp Bert1 -tp Bert2 ... '

There is no existing regular (cross sectional) run.

Do you know what the issue is ?

The only dirs in LAB_S00308/standard/20161209_2776_12092016/structural/longitudinal/freesurfer are

lrwxrwxrwx 1 djk root 100 Jan 28 10:29 1 -> ../../../../20161209_2776_12092016/structural/freesurfer6/LAB_S00308_standard_20161209_2776_12092016 lrwxrwxrwx 1 djk root 100 Jan 28 10:29 baseline -> ../../../../20080725_3594_07252008/structural/freesurfer6/LAB_S00308_standard_20080725_3594_07252008 drwxr-xr-x 3 djk root  23 Jan 28 10:29 template_baseline_1

Thanks

Kilian