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Hi ,
The following command worked fine under 5.3.0
recon-all -openmp 88 -sd LAB_S00308/standard/20161209_2776_12092016/structural/longitudinal/freesurfer -base template_baseline_1 -tp baseline -tp 1 -all
but now it produces there error
ERROR: It appears that the -base templateID that you passed: -base template_baseline_1 is an existing regular (cross sectional) run! Please make sure you pass a new name (not one of the time points) for the template with -base. For example, if you are trying to create a -base:
' -base BertTemplate -tp Bert1 -tp Bert2 ... '
There is no existing regular (cross sectional) run.
Do you know what the issue is ?
The only dirs in LAB_S00308/standard/20161209_2776_12092016/structural/longitudinal/freesurfer are
lrwxrwxrwx 1 djk root 100 Jan 28 10:29 1 -> ../../../../20161209_2776_12092016/structural/freesurfer6/LAB_S00308_standard_20161209_2776_12092016 lrwxrwxrwx 1 djk root 100 Jan 28 10:29 baseline -> ../../../../20080725_3594_07252008/structural/freesurfer6/LAB_S00308_standard_20080725_3594_07252008 drwxr-xr-x 3 djk root 23 Jan 28 10:29 template_baseline_1
Thanks
Kilian