The non-gui verion is to run mri_glmfit from the command line:) doug

On 11/13/2013 05:23 PM, dgw wrote:

Hello,

I sent the message below yesterday. I can confirm that I am also having problems visualizing with qdec using the standard nmr center install over nx. Everytime I click generate stats table, I get the error below. Is there a non-gui version, which I can use? Does anyone have a way to use this over nx or vnc?

Thank You, Dan

I am having trouble running qdec over an NX session. I downloaded a FreeSurfer installation (5.3.0) to a network drive (/cluster/neuromind/dwakeman/software/freesurfer/). The installation has no trouble running recon-all; however, when I try to run qdec, I get vtk errors (see below):

ERROR: In /usr/pubsw/packages/KWWidgets/CVS-vtk560/KWWidgets/vtkKWTkUtilities.cxx, line 230 vtkKWQdecApp (0x27454520): Script: vtkTemp2 GenerateStatsDataTables Returned Error on line 1: Uncaught exception: command failed: asegstats2table --common-segs --meas volume --tablefile /autofs/cluster/neuromind/dwakeman/study/qdec/stats_tables/aseg.volume.stats.dat --statsfile=aseg.stats --subjects ead_01 ead_02 ead_03 ead_04 ead_11 ead_12 ead_13 ead_14

Stack trace: Uncaught exception: command failed: asegstats2table --common-segs --meas volume --tablefile /autofs/cluster/neuromind/dwakeman/study/qdec/stats_tables/aseg.volume.stats.dat --statsfile=aseg.stats --subjects ead_01 ead_02 ead_03 ead_04 ead_11 ead_12 ead_13 ead_14

while executing "vtkTemp2 GenerateStatsDataTables"

help@nmr.mgh.harvard.edu told me that I shouldn't need vglrun (as indicated on the wiki). Is there something I need to do to fix the installation, or do I need vglrun?

Thank You, Dan Wakeman

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