Dear All,
I am a new user of FreeSurfer. I have two questions:
1> Is there a way to convert FreeSurfer surface files to Analyze format? I use 'tkmedit bert brain.mgz lh.pial' to view the image with the surface bounday, and hope that I can save the image and the surface boundary with Analyze format.
2> mri_convert can be use to convert *.mgz file to Analyze file. I use "mri_convert brain.mgz brain.img"> It is empty when I try to open "brain.img" with MRICON software.
Thank you so sume.
Best Regards, Yan
Hi Yan,
mri_convert should be able to convert back and forth, just based on extension.
mri_convert brain.mgz brain.img and
mri_convert brain.img brain.mgz
should both work. Try loading the .img in tkmedit and see if it displays properly
cheers, Bruce
On Wed, 1 Mar 2006, yanxia wrote:
Dear All,
I am a new user of FreeSurfer. I have two questions:
1> Is there a way to convert FreeSurfer surface files to Analyze format? I use 'tkmedit bert brain.mgz lh.pial' to view the image with the surface bounday, and hope that I can save the image and the surface boundary with Analyze format.
2> mri_convert can be use to convert *.mgz file to Analyze file. I use "mri_convert brain.mgz brain.img"> It is empty when I try to open "brain.img" with MRICON software.
Thank you so sume.
Best Regards, Yan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
yanxia wrote:
Dear All,
I am a new user of FreeSurfer. I have two questions:
1> Is there a way to convert FreeSurfer surface files to Analyze format? I use 'tkmedit bert brain.mgz lh.pial' to view the image with the surface bounday, and hope that I can save the image and the surface boundary with Analyze format.
I'm not sure what you mean here. If you want a binary volume mask of the surface, on is automatically created with reconstruction. It is in mri/?h.ribbon.mgz, which can be converted to analyze with mri_convert as you've done below.
2> mri_convert can be use to convert *.mgz file to Analyze file. I use "mri_convert brain.mgz brain.img"> It is empty when I try to open "brain.img" with MRICON software.
Don't know anything about MRICON. The cmd line look right. Try loading brain.img into tkmedit. If it's there, then you're on your own.
doug
Thank you so sume.
Best Regards, Yan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Doug Greve -
yanxia