External Email - Use Caution
Hello,
I am struggling to run mri_glmfit because various flags seem to be going unrecognized.
This is my command:
mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx —-surf fsaverage lh —-cortex --glmdir lh.V1_gender_age.glmdir
Where "V1_lh_stats.txt" is a table of V1 thickness values produced by aparcstats2table. I've run into issues with the --table, --fsgd, and --surf flags (as I shuffle around the command line arguments and/or replace the --table flag with a --y flag). Any idea what's going wrong?
Thank you!
Try this mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx --glmdir lh.V1_gender_age.glmdir You would only use --surface if the input is a surface map (not when the input is a table, even if the table has data derived from the surface)
On 3/23/19 3:39 PM, Olamide Abiose wrote:
External Email - Use Caution
Hello,
I am struggling to run mri_glmfit because various flags seem to be going unrecognized.
This is my command:
mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx —-surf fsaverage lh —-cortex --glmdir lh.V1_gender_age.glmdir
Where "V1_lh_stats.txt" is a table of V1 thickness values produced by aparcstats2table. I've run into issues with the --table, --fsgd, and --surf flags (as I shuffle around the command line arguments and/or replace the --table flag with a --y flag). Any idea what's going wrong?
Thank you!
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Unfortunately I tried this before emailing and no luck. Any other advice?
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu Sent: Monday, March 25, 2019 11:06:53 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_glmfit flags not working
Try this mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx --glmdir lh.V1_gender_age.glmdir You would only use --surface if the input is a surface map (not when the input is a table, even if the table has data derived from the surface)
On 3/23/19 3:39 PM, Olamide Abiose wrote:
External Email - Use Caution
Hello,
I am struggling to run mri_glmfit because various flags seem to be going unrecognized.
This is my command:
mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx —-surf fsaverage lh —-cortex --glmdir lh.V1_gender_age.glmdir
Where "V1_lh_stats.txt" is a table of V1 thickness values produced by aparcstats2table. I've run into issues with the --table, --fsgd, and --surf flags (as I shuffle around the command line arguments and/or replace the --table flag with a --y flag). Any idea what's going wrong?
Thank you!
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
can you give more information? send the command line and terminal output and a fuller description of the actual problem
On 3/25/19 1:05 PM, Olamide Abiose wrote:
External Email - Use Caution
Unfortunately I tried this before emailing and no luck. Any other advice?
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu *Sent:* Monday, March 25, 2019 11:06:53 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] mri_glmfit flags not working Try this mri_glmfit —-table V1_lh_stats.txt —-fsgdglm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx --glmdir lh.V1_gender_age.glmdir You would only use --surface if the input is a surface map (not when the input is a table, even if the table has data derived from the surface)
On 3/23/19 3:39 PM, Olamide Abiose wrote:
External Email - Use Caution
Hello,
I am struggling to run mri_glmfit because various flags seem to be going unrecognized.
This is my command:
mri_glmfit —-table V1_lh_stats.txt —-fsgdglm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx —-surf fsaverage lh —-cortex --glmdir lh.V1_gender_age.glmdir
Where "V1_lh_stats.txt" is a table of V1 thickness values produced by aparcstats2table. I've run into issues with the --table, --fsgd, and --surf flags (as I shuffle around the command line arguments and/or replace the --table flag with a --y flag). Any idea what's going wrong?
Thank you!
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Greve, Douglas N.,Ph.D. -
Olamide Abiose