It was not mris_fix_topology that failed but mris_euler_number (but that might have failed because of something in the topology fix). What happens if you:
cd /home/falk/freesurfer/subjects/yv98_05mm_div mris_euler_number ../surf/rh.orig
doug
Falk Lüsebrink wrote:
Hi FreeSurfers,
Attached is a log file containing an error of mris_fix_topology and I would like to know how to fix that issue if that is possible. Is it possible to view a defect (in that case #33) in tksurfer or freeview to identify a possible error in the wm.mgz or filled.mgz to correct it manually?
Thanks in advance,
Falk
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug,
I get the following error:
rh.orig: face[161898].v[2] = 82472, but face 161898 not in vertex 82472 face list
Falk
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Thursday, August 20, 2009 12:12 AM To: Falk Lüsebrink Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mris_fix_topology
It was not mris_fix_topology that failed but mris_euler_number (but that might have failed because of something in the topology fix). What happens if you:
cd /home/falk/freesurfer/subjects/yv98_05mm_div mris_euler_number ../surf/rh.orig
doug
Falk Lüsebrink wrote:
Hi FreeSurfers,
Attached is a log file containing an error of mris_fix_topology and I would like to know how to fix that issue if that is possible. Is it possible to view a defect (in that case #33) in tksurfer or freeview to identify a possible error in the wm.mgz or filled.mgz to correct it manually?
Thanks in advance,
Falk
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas N Greve -
Falk Lüsebrink